Interactive effects of ocean acidification and nitrogen limitation on the diatom Phaeodactylum tricornutum ...

Climate change is expected to bring about alterations in the marine physical and chemical environment that will induce changes in the concentration of dissolved CO2 and in nutrient availability. These in turn are expected to affect the physiological performance of phytoplankton. In order to learn ho...

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Main Authors: Li, Wei, Gao, Kunshan, Beardall, John
Format: Dataset
Language:English
Published: PANGAEA 2012
Subjects:
Online Access:https://dx.doi.org/10.1594/pangaea.823110
https://doi.pangaea.de/10.1594/PANGAEA.823110
id ftdatacite:10.1594/pangaea.823110
record_format openpolar
spelling ftdatacite:10.1594/pangaea.823110 2024-09-09T20:01:31+00:00 Interactive effects of ocean acidification and nitrogen limitation on the diatom Phaeodactylum tricornutum ... Li, Wei Gao, Kunshan Beardall, John 2012 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.823110 https://doi.pangaea.de/10.1594/PANGAEA.823110 en eng PANGAEA https://cran.r-project.org/package=seacarb https://dx.doi.org/10.1371/journal.pone.0051590 https://cran.r-project.org/package=seacarb Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode cc-by-3.0 Bottles or small containers/Aquaria <20 L Chromista Growth/Morphology Laboratory experiment Laboratory strains Macro-nutrients North Pacific Ochrophyta Phaeodactylum tricornutum Phytoplankton Primary production/Photosynthesis Respiration Single species Species Identification Treatment Growth rate Growth rate, standard deviation Chlorophyll a per cell Chlorophyll a, standard deviation Carotenoids per cell Carotenoids, standard deviation Chlorophyll c per cell Chlorophyll c, standard deviation Cell size Cell counts, percent of total Cell counts, standard deviation Maximum photochemical quantum yield of photosystem II Maximum photochemical quantum yield of photosystem II, standard deviation Effective quantum yield Effective quantum yield, standard deviation Cell size, standard deviation Cell biovolume Cell biovolume, standard deviation Maximal electron transport rate, relative Maximal electron transport rate, relative, standard deviation Carbon, inorganic, dissolved, reciprocal of photosynthetic affinity value Carbon, inorganic, dissolved, reciprocal of photosynthetic affinity value, standard deviation Carbon dioxide, reciprocal of photosynthetic affinity value Carbon dioxide, reciprocal of photosynthetic affinity value, standard deviation Carbon, inorganic, dissolved Photochemical efficiency Photochemical efficiency, standard deviation Respiration rate, oxygen, per cell Respiration rate, oxygen, standard deviation Respiration rate, oxygen, per chlorophyll a Carbon, organic, particulate, per cell Particulate organic carbon content per cell, standard deviation Nitrogen, organic, particulate, per cell Particulate organic nitrogen per cell, standard deviation dataset Supplementary Dataset Dataset 2012 ftdatacite https://doi.org/10.1594/pangaea.82311010.1371/journal.pone.0051590 2024-06-17T10:47:13Z Climate change is expected to bring about alterations in the marine physical and chemical environment that will induce changes in the concentration of dissolved CO2 and in nutrient availability. These in turn are expected to affect the physiological performance of phytoplankton. In order to learn how phytoplankton respond to the predicted scenario of increased CO2 and decreased nitrogen in the surface mixed layer, we investigated the diatom Phaeodactylum tricornutum as a model organism. The cells were cultured in both low CO2 (390 µatm) and high CO2 (1000 µatm) conditions at limiting (10 µmol/L) or enriched (110 µmol/L) nitrate concentrations. Our study shows that nitrogen limitation resulted in significant decreases in cell size, pigmentation, growth rate and effective quantum yield of Phaeodactylum tricornutum, but these parameters were not affected by enhanced dissolved CO2 and lowered pH. However, increased CO2 concentration induced higher rETRmax and higher dark respiration rates and decreased the CO2 ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2013-11-20. ... Dataset Ocean acidification DataCite Pacific
institution Open Polar
collection DataCite
op_collection_id ftdatacite
language English
topic Bottles or small containers/Aquaria <20 L
Chromista
Growth/Morphology
Laboratory experiment
Laboratory strains
Macro-nutrients
North Pacific
Ochrophyta
Phaeodactylum tricornutum
Phytoplankton
Primary production/Photosynthesis
Respiration
Single species
Species
Identification
Treatment
Growth rate
Growth rate, standard deviation
Chlorophyll a per cell
Chlorophyll a, standard deviation
Carotenoids per cell
Carotenoids, standard deviation
Chlorophyll c per cell
Chlorophyll c, standard deviation
Cell size
Cell counts, percent of total
Cell counts, standard deviation
Maximum photochemical quantum yield of photosystem II
Maximum photochemical quantum yield of photosystem II, standard deviation
Effective quantum yield
Effective quantum yield, standard deviation
Cell size, standard deviation
Cell biovolume
Cell biovolume, standard deviation
Maximal electron transport rate, relative
Maximal electron transport rate, relative, standard deviation
Carbon, inorganic, dissolved, reciprocal of photosynthetic affinity value
Carbon, inorganic, dissolved, reciprocal of photosynthetic affinity value, standard deviation
Carbon dioxide, reciprocal of photosynthetic affinity value
Carbon dioxide, reciprocal of photosynthetic affinity value, standard deviation
Carbon, inorganic, dissolved
Photochemical efficiency
Photochemical efficiency, standard deviation
Respiration rate, oxygen, per cell
Respiration rate, oxygen, standard deviation
Respiration rate, oxygen, per chlorophyll a
Carbon, organic, particulate, per cell
Particulate organic carbon content per cell, standard deviation
Nitrogen, organic, particulate, per cell
Particulate organic nitrogen per cell, standard deviation
spellingShingle Bottles or small containers/Aquaria <20 L
Chromista
Growth/Morphology
Laboratory experiment
Laboratory strains
Macro-nutrients
North Pacific
Ochrophyta
Phaeodactylum tricornutum
Phytoplankton
Primary production/Photosynthesis
Respiration
Single species
Species
Identification
Treatment
Growth rate
Growth rate, standard deviation
Chlorophyll a per cell
Chlorophyll a, standard deviation
Carotenoids per cell
Carotenoids, standard deviation
Chlorophyll c per cell
Chlorophyll c, standard deviation
Cell size
Cell counts, percent of total
Cell counts, standard deviation
Maximum photochemical quantum yield of photosystem II
Maximum photochemical quantum yield of photosystem II, standard deviation
Effective quantum yield
Effective quantum yield, standard deviation
Cell size, standard deviation
Cell biovolume
Cell biovolume, standard deviation
Maximal electron transport rate, relative
Maximal electron transport rate, relative, standard deviation
Carbon, inorganic, dissolved, reciprocal of photosynthetic affinity value
Carbon, inorganic, dissolved, reciprocal of photosynthetic affinity value, standard deviation
Carbon dioxide, reciprocal of photosynthetic affinity value
Carbon dioxide, reciprocal of photosynthetic affinity value, standard deviation
Carbon, inorganic, dissolved
Photochemical efficiency
Photochemical efficiency, standard deviation
Respiration rate, oxygen, per cell
Respiration rate, oxygen, standard deviation
Respiration rate, oxygen, per chlorophyll a
Carbon, organic, particulate, per cell
Particulate organic carbon content per cell, standard deviation
Nitrogen, organic, particulate, per cell
Particulate organic nitrogen per cell, standard deviation
Li, Wei
Gao, Kunshan
Beardall, John
Interactive effects of ocean acidification and nitrogen limitation on the diatom Phaeodactylum tricornutum ...
topic_facet Bottles or small containers/Aquaria <20 L
Chromista
Growth/Morphology
Laboratory experiment
Laboratory strains
Macro-nutrients
North Pacific
Ochrophyta
Phaeodactylum tricornutum
Phytoplankton
Primary production/Photosynthesis
Respiration
Single species
Species
Identification
Treatment
Growth rate
Growth rate, standard deviation
Chlorophyll a per cell
Chlorophyll a, standard deviation
Carotenoids per cell
Carotenoids, standard deviation
Chlorophyll c per cell
Chlorophyll c, standard deviation
Cell size
Cell counts, percent of total
Cell counts, standard deviation
Maximum photochemical quantum yield of photosystem II
Maximum photochemical quantum yield of photosystem II, standard deviation
Effective quantum yield
Effective quantum yield, standard deviation
Cell size, standard deviation
Cell biovolume
Cell biovolume, standard deviation
Maximal electron transport rate, relative
Maximal electron transport rate, relative, standard deviation
Carbon, inorganic, dissolved, reciprocal of photosynthetic affinity value
Carbon, inorganic, dissolved, reciprocal of photosynthetic affinity value, standard deviation
Carbon dioxide, reciprocal of photosynthetic affinity value
Carbon dioxide, reciprocal of photosynthetic affinity value, standard deviation
Carbon, inorganic, dissolved
Photochemical efficiency
Photochemical efficiency, standard deviation
Respiration rate, oxygen, per cell
Respiration rate, oxygen, standard deviation
Respiration rate, oxygen, per chlorophyll a
Carbon, organic, particulate, per cell
Particulate organic carbon content per cell, standard deviation
Nitrogen, organic, particulate, per cell
Particulate organic nitrogen per cell, standard deviation
description Climate change is expected to bring about alterations in the marine physical and chemical environment that will induce changes in the concentration of dissolved CO2 and in nutrient availability. These in turn are expected to affect the physiological performance of phytoplankton. In order to learn how phytoplankton respond to the predicted scenario of increased CO2 and decreased nitrogen in the surface mixed layer, we investigated the diatom Phaeodactylum tricornutum as a model organism. The cells were cultured in both low CO2 (390 µatm) and high CO2 (1000 µatm) conditions at limiting (10 µmol/L) or enriched (110 µmol/L) nitrate concentrations. Our study shows that nitrogen limitation resulted in significant decreases in cell size, pigmentation, growth rate and effective quantum yield of Phaeodactylum tricornutum, but these parameters were not affected by enhanced dissolved CO2 and lowered pH. However, increased CO2 concentration induced higher rETRmax and higher dark respiration rates and decreased the CO2 ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2013-11-20. ...
format Dataset
author Li, Wei
Gao, Kunshan
Beardall, John
author_facet Li, Wei
Gao, Kunshan
Beardall, John
author_sort Li, Wei
title Interactive effects of ocean acidification and nitrogen limitation on the diatom Phaeodactylum tricornutum ...
title_short Interactive effects of ocean acidification and nitrogen limitation on the diatom Phaeodactylum tricornutum ...
title_full Interactive effects of ocean acidification and nitrogen limitation on the diatom Phaeodactylum tricornutum ...
title_fullStr Interactive effects of ocean acidification and nitrogen limitation on the diatom Phaeodactylum tricornutum ...
title_full_unstemmed Interactive effects of ocean acidification and nitrogen limitation on the diatom Phaeodactylum tricornutum ...
title_sort interactive effects of ocean acidification and nitrogen limitation on the diatom phaeodactylum tricornutum ...
publisher PANGAEA
publishDate 2012
url https://dx.doi.org/10.1594/pangaea.823110
https://doi.pangaea.de/10.1594/PANGAEA.823110
geographic Pacific
geographic_facet Pacific
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://cran.r-project.org/package=seacarb
https://dx.doi.org/10.1371/journal.pone.0051590
https://cran.r-project.org/package=seacarb
op_rights Creative Commons Attribution 3.0 Unported
https://creativecommons.org/licenses/by/3.0/legalcode
cc-by-3.0
op_doi https://doi.org/10.1594/pangaea.82311010.1371/journal.pone.0051590
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