Seawater carbonate chemistry and diatom Phaeodactylum tricornutum (CCMA 106) biological processes during experiments, 2010, supplement to: Wu, YaPing; Gao, Kunshan; Riebesell, Ulf (2010): CO2-induced seawater acidification affects physiological performance of the marine diatom Phaeodactylum tricornutum. Biogeosciences, 7(9), 2915-2923

CO2/pH perturbation experiments were carried out under two different pCO2 levels (39.3 and 101.3 Pa) to evaluate effects of CO2-induced ocean acidification on the marine diatom Phaeodactylum tricornutum. After acclimation (>20 generations) to ambient and elevated CO2 conditions (with correspondin...

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Bibliographic Details
Main Authors: Wu, YaPing, Gao, Kunshan, Riebesell, Ulf
Format: Dataset
Language:English
Published: PANGAEA - Data Publisher for Earth & Environmental Science 2010
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.758214
https://doi.pangaea.de/10.1594/PANGAEA.758214
id ftdatacite:10.1594/pangaea.758214
record_format openpolar
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Bottles or small containers/Aquaria <20 L
Chromista
Growth/Morphology
Laboratory experiment
Laboratory strains
Not applicable
Ochrophyta
Pelagos
Phaeodactylum tricornutum
Phytoplankton
Primary production/Photosynthesis
Respiration
Single species
Experimental treatment
Comment
Salinity
Temperature, water
Carbon dioxide, partial pressure
Carbon dioxide, partial pressure, standard deviation
pH
pH, standard deviation
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard deviation
Bicarbonate ion
Bicarbonate ion, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Carbon dioxide
Carbon dioxide, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Photochemical efficiency
Photochemical efficiency, standard deviation
Maximum potential photosynthesis
Maximum potential photosynthesis, standard deviation
Light saturation point
Light saturation point, standard deviation
Chlorophyll a per cell
Chlorophyll a, standard deviation
Growth rate
Growth rate, standard deviation
Photosynthetic carbon fixation rate
Photosynthetic carbon fixation rate, standard deviation
Respiration rate, oxygen
Respiration rate, oxygen, standard deviation
Carbonate system computation flag
Partial pressure of carbon dioxide water at sea surface temperature wet air
Fugacity of carbon dioxide water at sea surface temperature wet air
Aragonite saturation state
Calcite saturation state
Measured
Infrared CO2/H2O gas analyzer, non-dispersive, LI-COR type LI-7000
pH meter Benchtop pH510, OAKTON
DIC analyzer AS-C3, Apollo Scitech
Calculated using CO2SYS
Calculated, see references
see references
Spectrophotometry
Calculated
Liquid scintillation counter Tri-Carb 2800TR, Perkin-Elmer
Clark type oxygen electrode 5300A, YSI
Calculated using seacarb after Nisumaa et al. 2010
European network of excellence for Ocean Ecosystems Analysis EUR-OCEANS
European Project on Ocean Acidification EPOCA
Ocean Acidification International Coordination Centre OA-ICC
spellingShingle Bottles or small containers/Aquaria <20 L
Chromista
Growth/Morphology
Laboratory experiment
Laboratory strains
Not applicable
Ochrophyta
Pelagos
Phaeodactylum tricornutum
Phytoplankton
Primary production/Photosynthesis
Respiration
Single species
Experimental treatment
Comment
Salinity
Temperature, water
Carbon dioxide, partial pressure
Carbon dioxide, partial pressure, standard deviation
pH
pH, standard deviation
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard deviation
Bicarbonate ion
Bicarbonate ion, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Carbon dioxide
Carbon dioxide, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Photochemical efficiency
Photochemical efficiency, standard deviation
Maximum potential photosynthesis
Maximum potential photosynthesis, standard deviation
Light saturation point
Light saturation point, standard deviation
Chlorophyll a per cell
Chlorophyll a, standard deviation
Growth rate
Growth rate, standard deviation
Photosynthetic carbon fixation rate
Photosynthetic carbon fixation rate, standard deviation
Respiration rate, oxygen
Respiration rate, oxygen, standard deviation
Carbonate system computation flag
Partial pressure of carbon dioxide water at sea surface temperature wet air
Fugacity of carbon dioxide water at sea surface temperature wet air
Aragonite saturation state
Calcite saturation state
Measured
Infrared CO2/H2O gas analyzer, non-dispersive, LI-COR type LI-7000
pH meter Benchtop pH510, OAKTON
DIC analyzer AS-C3, Apollo Scitech
Calculated using CO2SYS
Calculated, see references
see references
Spectrophotometry
Calculated
Liquid scintillation counter Tri-Carb 2800TR, Perkin-Elmer
Clark type oxygen electrode 5300A, YSI
Calculated using seacarb after Nisumaa et al. 2010
European network of excellence for Ocean Ecosystems Analysis EUR-OCEANS
European Project on Ocean Acidification EPOCA
Ocean Acidification International Coordination Centre OA-ICC
Wu, YaPing
Gao, Kunshan
Riebesell, Ulf
Seawater carbonate chemistry and diatom Phaeodactylum tricornutum (CCMA 106) biological processes during experiments, 2010, supplement to: Wu, YaPing; Gao, Kunshan; Riebesell, Ulf (2010): CO2-induced seawater acidification affects physiological performance of the marine diatom Phaeodactylum tricornutum. Biogeosciences, 7(9), 2915-2923
topic_facet Bottles or small containers/Aquaria <20 L
Chromista
Growth/Morphology
Laboratory experiment
Laboratory strains
Not applicable
Ochrophyta
Pelagos
Phaeodactylum tricornutum
Phytoplankton
Primary production/Photosynthesis
Respiration
Single species
Experimental treatment
Comment
Salinity
Temperature, water
Carbon dioxide, partial pressure
Carbon dioxide, partial pressure, standard deviation
pH
pH, standard deviation
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard deviation
Bicarbonate ion
Bicarbonate ion, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Carbon dioxide
Carbon dioxide, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Photochemical efficiency
Photochemical efficiency, standard deviation
Maximum potential photosynthesis
Maximum potential photosynthesis, standard deviation
Light saturation point
Light saturation point, standard deviation
Chlorophyll a per cell
Chlorophyll a, standard deviation
Growth rate
Growth rate, standard deviation
Photosynthetic carbon fixation rate
Photosynthetic carbon fixation rate, standard deviation
Respiration rate, oxygen
Respiration rate, oxygen, standard deviation
Carbonate system computation flag
Partial pressure of carbon dioxide water at sea surface temperature wet air
Fugacity of carbon dioxide water at sea surface temperature wet air
Aragonite saturation state
Calcite saturation state
Measured
Infrared CO2/H2O gas analyzer, non-dispersive, LI-COR type LI-7000
pH meter Benchtop pH510, OAKTON
DIC analyzer AS-C3, Apollo Scitech
Calculated using CO2SYS
Calculated, see references
see references
Spectrophotometry
Calculated
Liquid scintillation counter Tri-Carb 2800TR, Perkin-Elmer
Clark type oxygen electrode 5300A, YSI
Calculated using seacarb after Nisumaa et al. 2010
European network of excellence for Ocean Ecosystems Analysis EUR-OCEANS
European Project on Ocean Acidification EPOCA
Ocean Acidification International Coordination Centre OA-ICC
description CO2/pH perturbation experiments were carried out under two different pCO2 levels (39.3 and 101.3 Pa) to evaluate effects of CO2-induced ocean acidification on the marine diatom Phaeodactylum tricornutum. After acclimation (>20 generations) to ambient and elevated CO2 conditions (with corresponding pH values of 8.15 and 7.80, respectively), growth and photosynthetic carbon fixation rates of high CO2 grown cells were enhanced by 5% and 12%, respectively, and dark respiration stimulated by 34% compared to cells grown at ambient CO2. The half saturation constant (Km) for carbon fixation (dissolved inorganic carbon, DIC) increased by 20% under the low pH and high CO2 condition, reflecting a decreased affinity for HCO3- or/and CO2 and down-regulated carbon concentrating mechanism (CCM). In the high CO2 grown cells, the electron transport rate from photosystem II (PSII) was photoinhibited to a greater extent at high levels of photosynthetically active radiation, while non-photochemical quenching was reduced compared to low CO2 grown cells. This was probably due to the down-regulation of CCM, which serves as a sink for excessive energy. The balance between these positive and negative effects on diatom productivity will be a key factor in determining the net effect of rising atmospheric CO2 on ocean primary production. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
format Dataset
author Wu, YaPing
Gao, Kunshan
Riebesell, Ulf
author_facet Wu, YaPing
Gao, Kunshan
Riebesell, Ulf
author_sort Wu, YaPing
title Seawater carbonate chemistry and diatom Phaeodactylum tricornutum (CCMA 106) biological processes during experiments, 2010, supplement to: Wu, YaPing; Gao, Kunshan; Riebesell, Ulf (2010): CO2-induced seawater acidification affects physiological performance of the marine diatom Phaeodactylum tricornutum. Biogeosciences, 7(9), 2915-2923
title_short Seawater carbonate chemistry and diatom Phaeodactylum tricornutum (CCMA 106) biological processes during experiments, 2010, supplement to: Wu, YaPing; Gao, Kunshan; Riebesell, Ulf (2010): CO2-induced seawater acidification affects physiological performance of the marine diatom Phaeodactylum tricornutum. Biogeosciences, 7(9), 2915-2923
title_full Seawater carbonate chemistry and diatom Phaeodactylum tricornutum (CCMA 106) biological processes during experiments, 2010, supplement to: Wu, YaPing; Gao, Kunshan; Riebesell, Ulf (2010): CO2-induced seawater acidification affects physiological performance of the marine diatom Phaeodactylum tricornutum. Biogeosciences, 7(9), 2915-2923
title_fullStr Seawater carbonate chemistry and diatom Phaeodactylum tricornutum (CCMA 106) biological processes during experiments, 2010, supplement to: Wu, YaPing; Gao, Kunshan; Riebesell, Ulf (2010): CO2-induced seawater acidification affects physiological performance of the marine diatom Phaeodactylum tricornutum. Biogeosciences, 7(9), 2915-2923
title_full_unstemmed Seawater carbonate chemistry and diatom Phaeodactylum tricornutum (CCMA 106) biological processes during experiments, 2010, supplement to: Wu, YaPing; Gao, Kunshan; Riebesell, Ulf (2010): CO2-induced seawater acidification affects physiological performance of the marine diatom Phaeodactylum tricornutum. Biogeosciences, 7(9), 2915-2923
title_sort seawater carbonate chemistry and diatom phaeodactylum tricornutum (ccma 106) biological processes during experiments, 2010, supplement to: wu, yaping; gao, kunshan; riebesell, ulf (2010): co2-induced seawater acidification affects physiological performance of the marine diatom phaeodactylum tricornutum. biogeosciences, 7(9), 2915-2923
publisher PANGAEA - Data Publisher for Earth & Environmental Science
publishDate 2010
url https://dx.doi.org/10.1594/pangaea.758214
https://doi.pangaea.de/10.1594/PANGAEA.758214
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://dx.doi.org/10.5194/bg-7-2915-2010
op_rights Creative Commons Attribution 3.0 Unported
https://creativecommons.org/licenses/by/3.0/legalcode
cc-by-3.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/pangaea.758214
https://doi.org/10.5194/bg-7-2915-2010
_version_ 1766157532801269760
spelling ftdatacite:10.1594/pangaea.758214 2023-05-15T17:50:40+02:00 Seawater carbonate chemistry and diatom Phaeodactylum tricornutum (CCMA 106) biological processes during experiments, 2010, supplement to: Wu, YaPing; Gao, Kunshan; Riebesell, Ulf (2010): CO2-induced seawater acidification affects physiological performance of the marine diatom Phaeodactylum tricornutum. Biogeosciences, 7(9), 2915-2923 Wu, YaPing Gao, Kunshan Riebesell, Ulf 2010 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.758214 https://doi.pangaea.de/10.1594/PANGAEA.758214 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://dx.doi.org/10.5194/bg-7-2915-2010 Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode cc-by-3.0 CC-BY Bottles or small containers/Aquaria <20 L Chromista Growth/Morphology Laboratory experiment Laboratory strains Not applicable Ochrophyta Pelagos Phaeodactylum tricornutum Phytoplankton Primary production/Photosynthesis Respiration Single species Experimental treatment Comment Salinity Temperature, water Carbon dioxide, partial pressure Carbon dioxide, partial pressure, standard deviation pH pH, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Carbonate ion Carbonate ion, standard deviation Carbon dioxide Carbon dioxide, standard deviation Alkalinity, total Alkalinity, total, standard deviation Photochemical efficiency Photochemical efficiency, standard deviation Maximum potential photosynthesis Maximum potential photosynthesis, standard deviation Light saturation point Light saturation point, standard deviation Chlorophyll a per cell Chlorophyll a, standard deviation Growth rate Growth rate, standard deviation Photosynthetic carbon fixation rate Photosynthetic carbon fixation rate, standard deviation Respiration rate, oxygen Respiration rate, oxygen, standard deviation Carbonate system computation flag Partial pressure of carbon dioxide water at sea surface temperature wet air Fugacity of carbon dioxide water at sea surface temperature wet air Aragonite saturation state Calcite saturation state Measured Infrared CO2/H2O gas analyzer, non-dispersive, LI-COR type LI-7000 pH meter Benchtop pH510, OAKTON DIC analyzer AS-C3, Apollo Scitech Calculated using CO2SYS Calculated, see references see references Spectrophotometry Calculated Liquid scintillation counter Tri-Carb 2800TR, Perkin-Elmer Clark type oxygen electrode 5300A, YSI Calculated using seacarb after Nisumaa et al. 2010 European network of excellence for Ocean Ecosystems Analysis EUR-OCEANS European Project on Ocean Acidification EPOCA Ocean Acidification International Coordination Centre OA-ICC Dataset dataset Supplementary Dataset 2010 ftdatacite https://doi.org/10.1594/pangaea.758214 https://doi.org/10.5194/bg-7-2915-2010 2022-02-09T12:07:01Z CO2/pH perturbation experiments were carried out under two different pCO2 levels (39.3 and 101.3 Pa) to evaluate effects of CO2-induced ocean acidification on the marine diatom Phaeodactylum tricornutum. After acclimation (>20 generations) to ambient and elevated CO2 conditions (with corresponding pH values of 8.15 and 7.80, respectively), growth and photosynthetic carbon fixation rates of high CO2 grown cells were enhanced by 5% and 12%, respectively, and dark respiration stimulated by 34% compared to cells grown at ambient CO2. The half saturation constant (Km) for carbon fixation (dissolved inorganic carbon, DIC) increased by 20% under the low pH and high CO2 condition, reflecting a decreased affinity for HCO3- or/and CO2 and down-regulated carbon concentrating mechanism (CCM). In the high CO2 grown cells, the electron transport rate from photosystem II (PSII) was photoinhibited to a greater extent at high levels of photosynthetically active radiation, while non-photochemical quenching was reduced compared to low CO2 grown cells. This was probably due to the down-regulation of CCM, which serves as a sink for excessive energy. The balance between these positive and negative effects on diatom productivity will be a key factor in determining the net effect of rising atmospheric CO2 on ocean primary production. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)