Complete genome sequence of Thermus brockianus GE-1 reveals key enzymes of xylan/xylose metabolism ...
Thermus brockianus strain GE-1 is a thermophilic, Gram-negative, rod-shaped and non-motile bacterium that was isolated from the Geysir geothermal area, Iceland. Like other thermophiles, Thermus species are often used as model organisms to understand the mechanism of action of extremozymes, especiall...
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ftdatacite:10.15480/882.1407 2023-07-23T04:19:58+02:00 Complete genome sequence of Thermus brockianus GE-1 reveals key enzymes of xylan/xylose metabolism ... Schäfers, Christian Blank, Saskia Wiebusch, Sigrid Elleuche, Skander Antranikian, Garabed 2017 https://dx.doi.org/10.15480/882.1407 https://tore.tuhh.de/handle/11420/1410 en eng BioMed Central https://dx.doi.org/10.1186/s40793-017-0225-7 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 whole genome sequence de novo assembly Thermus Thermus brockianus xylan degradation xylose metabolism Thermophiles single molecule real-time sequencing Biowissenschaften, Biologie Journal Article article-journal JournalArticle ScholarlyArticle 2017 ftdatacite https://doi.org/10.15480/882.140710.1186/s40793-017-0225-7 2023-07-03T22:08:39Z Thermus brockianus strain GE-1 is a thermophilic, Gram-negative, rod-shaped and non-motile bacterium that was isolated from the Geysir geothermal area, Iceland. Like other thermophiles, Thermus species are often used as model organisms to understand the mechanism of action of extremozymes, especially focusing on their heat-activity and thermostability. Genome-specific features of T. brockianus GE-1 and their properties further help to explain processes of the adaption of extremophiles at elevated temperatures. Here we analyze the first whole genome sequence of T. brockianus strain GE-1. Insights of the genome sequence and the methodologies that were applied during de novo assembly and annotation are given in detail. The finished genome shows a phred quality value of QV50. The complete genome size is 2.38 Mb, comprising the chromosome (2,035,182 bp), the megaplasmid pTB1 (342,792 bp) and the smaller plasmid pTB2 (10,299 bp). Gene prediction revealed 2,511 genes in total, including 2,458 protein-encoding ... Article in Journal/Newspaper Iceland DataCite Metadata Store (German National Library of Science and Technology) Geysir ENVELOPE(-20.277,-20.277,64.307,64.307) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
whole genome sequence de novo assembly Thermus Thermus brockianus xylan degradation xylose metabolism Thermophiles single molecule real-time sequencing Biowissenschaften, Biologie |
spellingShingle |
whole genome sequence de novo assembly Thermus Thermus brockianus xylan degradation xylose metabolism Thermophiles single molecule real-time sequencing Biowissenschaften, Biologie Schäfers, Christian Blank, Saskia Wiebusch, Sigrid Elleuche, Skander Antranikian, Garabed Complete genome sequence of Thermus brockianus GE-1 reveals key enzymes of xylan/xylose metabolism ... |
topic_facet |
whole genome sequence de novo assembly Thermus Thermus brockianus xylan degradation xylose metabolism Thermophiles single molecule real-time sequencing Biowissenschaften, Biologie |
description |
Thermus brockianus strain GE-1 is a thermophilic, Gram-negative, rod-shaped and non-motile bacterium that was isolated from the Geysir geothermal area, Iceland. Like other thermophiles, Thermus species are often used as model organisms to understand the mechanism of action of extremozymes, especially focusing on their heat-activity and thermostability. Genome-specific features of T. brockianus GE-1 and their properties further help to explain processes of the adaption of extremophiles at elevated temperatures. Here we analyze the first whole genome sequence of T. brockianus strain GE-1. Insights of the genome sequence and the methodologies that were applied during de novo assembly and annotation are given in detail. The finished genome shows a phred quality value of QV50. The complete genome size is 2.38 Mb, comprising the chromosome (2,035,182 bp), the megaplasmid pTB1 (342,792 bp) and the smaller plasmid pTB2 (10,299 bp). Gene prediction revealed 2,511 genes in total, including 2,458 protein-encoding ... |
format |
Article in Journal/Newspaper |
author |
Schäfers, Christian Blank, Saskia Wiebusch, Sigrid Elleuche, Skander Antranikian, Garabed |
author_facet |
Schäfers, Christian Blank, Saskia Wiebusch, Sigrid Elleuche, Skander Antranikian, Garabed |
author_sort |
Schäfers, Christian |
title |
Complete genome sequence of Thermus brockianus GE-1 reveals key enzymes of xylan/xylose metabolism ... |
title_short |
Complete genome sequence of Thermus brockianus GE-1 reveals key enzymes of xylan/xylose metabolism ... |
title_full |
Complete genome sequence of Thermus brockianus GE-1 reveals key enzymes of xylan/xylose metabolism ... |
title_fullStr |
Complete genome sequence of Thermus brockianus GE-1 reveals key enzymes of xylan/xylose metabolism ... |
title_full_unstemmed |
Complete genome sequence of Thermus brockianus GE-1 reveals key enzymes of xylan/xylose metabolism ... |
title_sort |
complete genome sequence of thermus brockianus ge-1 reveals key enzymes of xylan/xylose metabolism ... |
publisher |
BioMed Central |
publishDate |
2017 |
url |
https://dx.doi.org/10.15480/882.1407 https://tore.tuhh.de/handle/11420/1410 |
long_lat |
ENVELOPE(-20.277,-20.277,64.307,64.307) |
geographic |
Geysir |
geographic_facet |
Geysir |
genre |
Iceland |
genre_facet |
Iceland |
op_relation |
https://dx.doi.org/10.1186/s40793-017-0225-7 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.15480/882.140710.1186/s40793-017-0225-7 |
_version_ |
1772183570646827008 |