Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research

DNA sequences offer powerful tools for describing the members and interactions of natural communities. In this study, we establish the to-date most comprehensive library of DNA barcodes for a terrestrial site, including all known macroscopic animals and vascular plants of an intensively studied area...

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Main Authors: Wirta, H., Várkonyi, G., Rasmussen, C., Kaartinen, R., Schmidt, N. M., Hebert, P. D. N., Barták, M., Blagoev, G., Disney, H., Ertl, S., Gjelstrup, P., Gwiazdowicz, D. J., Huldén, L., Ilmonen, J., Jakovlev, J., Jaschhof, M., Kahanpää, J., Kankaanpää, T., Krogh, P. H., Labbee, R., Lettner, C., Michelsen, V., Nielsen, S. A., Nielsen, T. R., Paasivirta, L., Pedersen, S., Pohjoismäki, J., Salmela, J., Vilkamaa, P., Väre, H., von Tschirnhaus, M., Roslin, T.
Language:unknown
Published: 2015
Subjects:
Online Access:http://nbn-resolving.org/urn:nbn:nl:ui:13-ug-6j5n
https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:91486
id ftdans:oai:easy.dans.knaw.nl:easy-dataset:91486
record_format openpolar
spelling ftdans:oai:easy.dans.knaw.nl:easy-dataset:91486 2023-07-02T03:31:19+02:00 Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research Wirta, H. Várkonyi, G. Rasmussen, C. Kaartinen, R. Schmidt, N. M. Hebert, P. D. N. Barták, M. Blagoev, G. Disney, H. Ertl, S. Gjelstrup, P. Gwiazdowicz, D. J. Huldén, L. Ilmonen, J. Jakovlev, J. Jaschhof, M. Kahanpää, J. Kankaanpää, T. Krogh, P. H. Labbee, R. Lettner, C. Michelsen, V. Nielsen, S. A. Nielsen, T. R. Paasivirta, L. Pedersen, S. Pohjoismäki, J. Salmela, J. Vilkamaa, P. Väre, H. von Tschirnhaus, M. Roslin, T. 2015-11-18T18:24:46.000+01:00 http://nbn-resolving.org/urn:nbn:nl:ui:13-ug-6j5n https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:91486 unknown doi:10.5061/dryad.sg5s0/1 doi:10.5061/dryad.sg5s0/2 doi:10.5061/dryad.sg5s0/3 doi:10.1111/1755-0998.12489 PMID:26602739 http://nbn-resolving.org/urn:nbn:nl:ui:13-ug-6j5n doi:10.5061/dryad.sg5s0 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:91486 OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf Life sciences medicine and health care 2015 ftdans https://doi.org/10.5061/dryad.sg5s0/110.5061/dryad.sg5s0/210.5061/dryad.sg5s0/310.1111/1755-0998.1248910.5061/dryad.sg5s0 2023-06-13T13:20:35Z DNA sequences offer powerful tools for describing the members and interactions of natural communities. In this study, we establish the to-date most comprehensive library of DNA barcodes for a terrestrial site, including all known macroscopic animals and vascular plants of an intensively studied area of the High Arctic, the Zackenberg Valley in Northeast Greenland. To demonstrate its utility, we apply the library to identify nearly 20 000 arthropod individuals from two Malaise traps, each operated for two summers. Drawing on this material, we estimate the coverage of previous morphology-based species inventories, derive a snapshot of faunal turnover in space and time and describe the abundance and phenology of species in the rapidly changing arctic environment. Overall, 403 terrestrial animal and 160 vascular plant species were recorded by morphology-based techniques. DNA barcodes (CO1) offered high resolution in discriminating among the local animal taxa, with 92% of morphologically distinguishable taxa assigned to unique Barcode Index Numbers (BINs) and 93% to monophyletic clusters. For vascular plants, resolution was lower, with 54% of species forming monophyletic clusters based on barcode regions rbcLa and ITS2. Malaise catches revealed 122 BINs not detected by previous sampling and DNA barcoding. The insect community was dominated by a few highly abundant taxa. Even closely related taxa differed in phenology, emphasizing the need for species-level resolution when describing ongoing shifts in arctic communities and ecosystems. The DNA barcode library now established for Zackenberg offers new scope for such explorations, and for the detailed dissection of interspecific interactions throughout the community. Other/Unknown Material Arctic Greenland Zackenberg Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen) Arctic Greenland
institution Open Polar
collection Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen)
op_collection_id ftdans
language unknown
topic Life sciences
medicine and health care
spellingShingle Life sciences
medicine and health care
Wirta, H.
Várkonyi, G.
Rasmussen, C.
Kaartinen, R.
Schmidt, N. M.
Hebert, P. D. N.
Barták, M.
Blagoev, G.
Disney, H.
Ertl, S.
Gjelstrup, P.
Gwiazdowicz, D. J.
Huldén, L.
Ilmonen, J.
Jakovlev, J.
Jaschhof, M.
Kahanpää, J.
Kankaanpää, T.
Krogh, P. H.
Labbee, R.
Lettner, C.
Michelsen, V.
Nielsen, S. A.
Nielsen, T. R.
Paasivirta, L.
Pedersen, S.
Pohjoismäki, J.
Salmela, J.
Vilkamaa, P.
Väre, H.
von Tschirnhaus, M.
Roslin, T.
Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
topic_facet Life sciences
medicine and health care
description DNA sequences offer powerful tools for describing the members and interactions of natural communities. In this study, we establish the to-date most comprehensive library of DNA barcodes for a terrestrial site, including all known macroscopic animals and vascular plants of an intensively studied area of the High Arctic, the Zackenberg Valley in Northeast Greenland. To demonstrate its utility, we apply the library to identify nearly 20 000 arthropod individuals from two Malaise traps, each operated for two summers. Drawing on this material, we estimate the coverage of previous morphology-based species inventories, derive a snapshot of faunal turnover in space and time and describe the abundance and phenology of species in the rapidly changing arctic environment. Overall, 403 terrestrial animal and 160 vascular plant species were recorded by morphology-based techniques. DNA barcodes (CO1) offered high resolution in discriminating among the local animal taxa, with 92% of morphologically distinguishable taxa assigned to unique Barcode Index Numbers (BINs) and 93% to monophyletic clusters. For vascular plants, resolution was lower, with 54% of species forming monophyletic clusters based on barcode regions rbcLa and ITS2. Malaise catches revealed 122 BINs not detected by previous sampling and DNA barcoding. The insect community was dominated by a few highly abundant taxa. Even closely related taxa differed in phenology, emphasizing the need for species-level resolution when describing ongoing shifts in arctic communities and ecosystems. The DNA barcode library now established for Zackenberg offers new scope for such explorations, and for the detailed dissection of interspecific interactions throughout the community.
author Wirta, H.
Várkonyi, G.
Rasmussen, C.
Kaartinen, R.
Schmidt, N. M.
Hebert, P. D. N.
Barták, M.
Blagoev, G.
Disney, H.
Ertl, S.
Gjelstrup, P.
Gwiazdowicz, D. J.
Huldén, L.
Ilmonen, J.
Jakovlev, J.
Jaschhof, M.
Kahanpää, J.
Kankaanpää, T.
Krogh, P. H.
Labbee, R.
Lettner, C.
Michelsen, V.
Nielsen, S. A.
Nielsen, T. R.
Paasivirta, L.
Pedersen, S.
Pohjoismäki, J.
Salmela, J.
Vilkamaa, P.
Väre, H.
von Tschirnhaus, M.
Roslin, T.
author_facet Wirta, H.
Várkonyi, G.
Rasmussen, C.
Kaartinen, R.
Schmidt, N. M.
Hebert, P. D. N.
Barták, M.
Blagoev, G.
Disney, H.
Ertl, S.
Gjelstrup, P.
Gwiazdowicz, D. J.
Huldén, L.
Ilmonen, J.
Jakovlev, J.
Jaschhof, M.
Kahanpää, J.
Kankaanpää, T.
Krogh, P. H.
Labbee, R.
Lettner, C.
Michelsen, V.
Nielsen, S. A.
Nielsen, T. R.
Paasivirta, L.
Pedersen, S.
Pohjoismäki, J.
Salmela, J.
Vilkamaa, P.
Väre, H.
von Tschirnhaus, M.
Roslin, T.
author_sort Wirta, H.
title Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
title_short Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
title_full Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
title_fullStr Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
title_full_unstemmed Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
title_sort data from: establishing a community-wide dna barcode library as a new tool for arctic research
publishDate 2015
url http://nbn-resolving.org/urn:nbn:nl:ui:13-ug-6j5n
https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:91486
geographic Arctic
Greenland
geographic_facet Arctic
Greenland
genre Arctic
Greenland
Zackenberg
genre_facet Arctic
Greenland
Zackenberg
op_relation doi:10.5061/dryad.sg5s0/1
doi:10.5061/dryad.sg5s0/2
doi:10.5061/dryad.sg5s0/3
doi:10.1111/1755-0998.12489
PMID:26602739
http://nbn-resolving.org/urn:nbn:nl:ui:13-ug-6j5n
doi:10.5061/dryad.sg5s0
https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:91486
op_rights OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI
https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf
op_doi https://doi.org/10.5061/dryad.sg5s0/110.5061/dryad.sg5s0/210.5061/dryad.sg5s0/310.1111/1755-0998.1248910.5061/dryad.sg5s0
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