Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of...
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ftdans:oai:easy.dans.knaw.nl:easy-dataset:90962 2023-07-02T03:33:35+02:00 Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. 2015-09-17T16:40:16.000+02:00 http://nbn-resolving.org/urn:nbn:nl:ui:13-al-bbzr https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:90962 unknown doi:10.5061/dryad.29fp0/1 doi:10.1093/jhered/esv081 PMID:26447215 http://nbn-resolving.org/urn:nbn:nl:ui:13-al-bbzr doi:10.5061/dryad.29fp0 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:90962 OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf Life sciences medicine and health care 2015 ftdans https://doi.org/10.5061/dryad.29fp0/110.1093/jhered/esv08110.5061/dryad.29fp0 2023-06-13T13:01:00Z Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus. Other/Unknown Material Rangifer tarandus Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen) |
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Open Polar |
collection |
Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen) |
op_collection_id |
ftdans |
language |
unknown |
topic |
Life sciences medicine and health care |
spellingShingle |
Life sciences medicine and health care Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
topic_facet |
Life sciences medicine and health care |
description |
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus. |
author |
Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. |
author_facet |
Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. |
author_sort |
Kharzinova, Veronika R. |
title |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_short |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_full |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_fullStr |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_full_unstemmed |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_sort |
data from: a study of applicability of snp chips developed for bovine and ovine species to whole-genome analysis of reindeer rangifer tarandus |
publishDate |
2015 |
url |
http://nbn-resolving.org/urn:nbn:nl:ui:13-al-bbzr https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:90962 |
genre |
Rangifer tarandus |
genre_facet |
Rangifer tarandus |
op_relation |
doi:10.5061/dryad.29fp0/1 doi:10.1093/jhered/esv081 PMID:26447215 http://nbn-resolving.org/urn:nbn:nl:ui:13-al-bbzr doi:10.5061/dryad.29fp0 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:90962 |
op_rights |
OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf |
op_doi |
https://doi.org/10.5061/dryad.29fp0/110.1093/jhered/esv08110.5061/dryad.29fp0 |
_version_ |
1770273582818000896 |