Data for Lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores
This repository contains the applicable data and code for the results of the paper "Lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores" by Holm et al. 2023. These data includes compound annotations of lipid molecul...
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ftdans:oai:easy.dans.knaw.nl:easy-dataset:327989 2023-12-31T10:00:11+01:00 Data for Lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores Holm, H (via Mendeley Data) 2023-12-05T07:26:29.426Z http://nbn-resolving.org/urn:nbn:nl:ui:13-4z-stcq https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:327989 unknown 2 rn43h5g585 http://nbn-resolving.org/urn:nbn:nl:ui:13-4z-stcq doi:10.17632/rn43h5g585.2 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:327989 OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf Henry Holm Interdisciplinary sciences 2023 ftdans https://doi.org/10.17632/rn43h5g585.2 2023-12-06T23:15:44Z This repository contains the applicable data and code for the results of the paper "Lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores" by Holm et al. 2023. These data includes compound annotations of lipid molecules from sea ice cores on the western Antarctic peninsula as well as calculations for quantification of these compounds. If you have any questions or inquiries about this, please do not hesitate to contact me at hholm@mit.edu.DataIce_Core_Lipid_5ppm_antd.csv: This file contains raw lipid annotations (rows) for compounds from sea ice samples (columns starting with "QE0-") . Column A designates the lipid annotations retained for analysis in the study. All units for sample columns are the integrated peak area from raw files. Additional compound metadata (columns B-T, MW-OD) includes chemical formula, retention time, adduct mass, and annotation validation information. For a complete interpretation of these annotation metadata columns see Collins et al. 2018 and the LOBSTAHS R software package:(https://bioconductor.org/packages/release/bioc/html/LOBSTAHS.html).Ice_Core_metadata.xlsx: This file contains sample metadata for ice core samples. Sample location information (filename, site, sample number, ect.) are shown in the first eight column. The length of the core segment, as well as the top and bottom depths of the segment in the total core are shown in column I-K. Volumes of the ice melt are shown in L-P.Curve_Compare.csv: This file contains the relative response factors for thirty eight triacylglycerol (TAG) standard as compared to an intact polar lipid standard (DNPPE) on the studies HPLC-ESI-MS system. Columns contain each TAGs carbon, double bonds, and equivalent carbon numbers. RFF shows the relative response to DNPPE (TAG/DNPPE) and the inverse (DNPPE/TAG). Last column lists the standards curves origin. CodeHolm_2023_IceCore contains R code for compound quantification and then figure generation in the study. ... Other/Unknown Material Antarc* Antarctic Antarctic Peninsula ice core Sea ice Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen) |
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Open Polar |
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Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen) |
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unknown |
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Interdisciplinary sciences |
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Interdisciplinary sciences Holm, H (via Mendeley Data) Data for Lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores |
topic_facet |
Interdisciplinary sciences |
description |
This repository contains the applicable data and code for the results of the paper "Lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores" by Holm et al. 2023. These data includes compound annotations of lipid molecules from sea ice cores on the western Antarctic peninsula as well as calculations for quantification of these compounds. If you have any questions or inquiries about this, please do not hesitate to contact me at hholm@mit.edu.DataIce_Core_Lipid_5ppm_antd.csv: This file contains raw lipid annotations (rows) for compounds from sea ice samples (columns starting with "QE0-") . Column A designates the lipid annotations retained for analysis in the study. All units for sample columns are the integrated peak area from raw files. Additional compound metadata (columns B-T, MW-OD) includes chemical formula, retention time, adduct mass, and annotation validation information. For a complete interpretation of these annotation metadata columns see Collins et al. 2018 and the LOBSTAHS R software package:(https://bioconductor.org/packages/release/bioc/html/LOBSTAHS.html).Ice_Core_metadata.xlsx: This file contains sample metadata for ice core samples. Sample location information (filename, site, sample number, ect.) are shown in the first eight column. The length of the core segment, as well as the top and bottom depths of the segment in the total core are shown in column I-K. Volumes of the ice melt are shown in L-P.Curve_Compare.csv: This file contains the relative response factors for thirty eight triacylglycerol (TAG) standard as compared to an intact polar lipid standard (DNPPE) on the studies HPLC-ESI-MS system. Columns contain each TAGs carbon, double bonds, and equivalent carbon numbers. RFF shows the relative response to DNPPE (TAG/DNPPE) and the inverse (DNPPE/TAG). Last column lists the standards curves origin. CodeHolm_2023_IceCore contains R code for compound quantification and then figure generation in the study. ... |
author |
Holm, H (via Mendeley Data) |
author_facet |
Holm, H (via Mendeley Data) |
author_sort |
Holm, H (via Mendeley Data) |
title |
Data for Lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores |
title_short |
Data for Lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores |
title_full |
Data for Lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores |
title_fullStr |
Data for Lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores |
title_full_unstemmed |
Data for Lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores |
title_sort |
data for lipidomic composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores |
publishDate |
2023 |
url |
http://nbn-resolving.org/urn:nbn:nl:ui:13-4z-stcq https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:327989 |
genre |
Antarc* Antarctic Antarctic Peninsula ice core Sea ice |
genre_facet |
Antarc* Antarctic Antarctic Peninsula ice core Sea ice |
op_relation |
2 rn43h5g585 http://nbn-resolving.org/urn:nbn:nl:ui:13-4z-stcq doi:10.17632/rn43h5g585.2 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:327989 |
op_rights |
OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf Henry Holm |
op_doi |
https://doi.org/10.17632/rn43h5g585.2 |
_version_ |
1786846910635573248 |