Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard.
The data presents foraminiferal diversity and spatial variability inferred from SSU rDNA sequences. Surface sediment samples were collected at 15 sampling stations located in the Svalbard archipelago. Sampling stations were located in the glaciated fjords (Isfjorden, Wijdefjorden, and Rijpfjorden) a...
Main Author: | |
---|---|
Language: | unknown |
Published: |
2020
|
Subjects: | |
Online Access: | http://nbn-resolving.org/urn:nbn:nl:ui:13-a2-ubd3 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:160256 |
id |
ftdans:oai:easy.dans.knaw.nl:easy-dataset:160256 |
---|---|
record_format |
openpolar |
spelling |
ftdans:oai:easy.dans.knaw.nl:easy-dataset:160256 2024-06-23T07:50:25+00:00 Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. Pawłowska, J (via Mendeley Data) 2020-03-03T15:57:54.776Z http://nbn-resolving.org/urn:nbn:nl:ui:13-a2-ubd3 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:160256 unknown 1 7kjkf8by5d http://nbn-resolving.org/urn:nbn:nl:ui:13-a2-ubd3 doi:10.17632/7kjkf8by5d.1 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:160256 OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf Joanna Pawłowska Interdisciplinary sciences 2020 ftdans https://doi.org/10.17632/7kjkf8by5d.1 2024-06-11T04:08:51Z The data presents foraminiferal diversity and spatial variability inferred from SSU rDNA sequences. Surface sediment samples were collected at 15 sampling stations located in the Svalbard archipelago. Sampling stations were located in the glaciated fjords (Isfjorden, Wijdefjorden, and Rijpfjorden) and in the vicinity of large tidewater glaciers (Nordaustlandet, Edgeoya). Foraminiferal sedimentary DNA (sedDNA) was analyzed in four sediment size fractions: > 500 µm, 500-100 µm, 100-63µm and < 63 µm. The total DNA was extracted from sediments, foraminifer-specific DNA fragments were amplified and sequenced using Illumina technology. Sequences are clustered into the Operational Taxonomic Units (OTUs), and for each OTU, a number of sequence reads are presented. This data provides the first insight into the genetic diversity of Arctic foraminifer in different sediment size fractions. The data is of interest to researchers in a field of metagenomic studies, including biomonitoring, biodiversity surveys, and environmental impact assessments. Moreover, it may be used as a reference in paleoenvironmental and paleoclimatic studies. Other/Unknown Material Arctic Foraminifera* Isfjord* Isfjorden Nordaustlandet Rijpfjord* Svalbard Wijdefjord* Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen) Arctic Nordaustlandet ENVELOPE(22.400,22.400,79.800,79.800) Rijpfjorden ENVELOPE(22.188,22.188,80.165,80.165) Svalbard Svalbard Archipelago Wijdefjorden ENVELOPE(15.569,15.569,79.543,79.543) |
institution |
Open Polar |
collection |
Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen) |
op_collection_id |
ftdans |
language |
unknown |
topic |
Interdisciplinary sciences |
spellingShingle |
Interdisciplinary sciences Pawłowska, J (via Mendeley Data) Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
topic_facet |
Interdisciplinary sciences |
description |
The data presents foraminiferal diversity and spatial variability inferred from SSU rDNA sequences. Surface sediment samples were collected at 15 sampling stations located in the Svalbard archipelago. Sampling stations were located in the glaciated fjords (Isfjorden, Wijdefjorden, and Rijpfjorden) and in the vicinity of large tidewater glaciers (Nordaustlandet, Edgeoya). Foraminiferal sedimentary DNA (sedDNA) was analyzed in four sediment size fractions: > 500 µm, 500-100 µm, 100-63µm and < 63 µm. The total DNA was extracted from sediments, foraminifer-specific DNA fragments were amplified and sequenced using Illumina technology. Sequences are clustered into the Operational Taxonomic Units (OTUs), and for each OTU, a number of sequence reads are presented. This data provides the first insight into the genetic diversity of Arctic foraminifer in different sediment size fractions. The data is of interest to researchers in a field of metagenomic studies, including biomonitoring, biodiversity surveys, and environmental impact assessments. Moreover, it may be used as a reference in paleoenvironmental and paleoclimatic studies. |
author |
Pawłowska, J (via Mendeley Data) |
author_facet |
Pawłowska, J (via Mendeley Data) |
author_sort |
Pawłowska, J (via Mendeley Data) |
title |
Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
title_short |
Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
title_full |
Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
title_fullStr |
Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
title_full_unstemmed |
Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
title_sort |
dataset of foraminiferal sedimentary dna (seddna) sequences from svalbard. |
publishDate |
2020 |
url |
http://nbn-resolving.org/urn:nbn:nl:ui:13-a2-ubd3 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:160256 |
long_lat |
ENVELOPE(22.400,22.400,79.800,79.800) ENVELOPE(22.188,22.188,80.165,80.165) ENVELOPE(15.569,15.569,79.543,79.543) |
geographic |
Arctic Nordaustlandet Rijpfjorden Svalbard Svalbard Archipelago Wijdefjorden |
geographic_facet |
Arctic Nordaustlandet Rijpfjorden Svalbard Svalbard Archipelago Wijdefjorden |
genre |
Arctic Foraminifera* Isfjord* Isfjorden Nordaustlandet Rijpfjord* Svalbard Wijdefjord* |
genre_facet |
Arctic Foraminifera* Isfjord* Isfjorden Nordaustlandet Rijpfjord* Svalbard Wijdefjord* |
op_relation |
1 7kjkf8by5d http://nbn-resolving.org/urn:nbn:nl:ui:13-a2-ubd3 doi:10.17632/7kjkf8by5d.1 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:160256 |
op_rights |
OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf Joanna Pawłowska |
op_doi |
https://doi.org/10.17632/7kjkf8by5d.1 |
_version_ |
1802641306903642112 |