Data from: Partial genomic survival of cave bears in living brown bears
Although many large mammal species went extinct at the end of the Pleistocene epoch, their DNA may persist due to past episodes of interspecies admixture. However, direct empirical evidence of the persistence of ancient alleles remains scarce. Here, we present multifold coverage genomic data from fo...
Published in: | Pedobiologia |
---|---|
Main Authors: | , , , , , , , , , , , , , , , , , , , , , , |
Language: | unknown |
Published: |
2018
|
Subjects: | |
Online Access: | http://nbn-resolving.org/urn:nbn:nl:ui:13-tb-o5uw https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:116799 |
id |
ftdans:oai:easy.dans.knaw.nl:easy-dataset:116799 |
---|---|
record_format |
openpolar |
spelling |
ftdans:oai:easy.dans.knaw.nl:easy-dataset:116799 2023-07-02T03:33:54+02:00 Data from: Partial genomic survival of cave bears in living brown bears Barlow, Axel Cahill, James A. Hartmann, Stefanie Theunert, Christoph Xenikoudakis, Georgios Fortes, Gloria G. Paijmans, Johanna L. A. Rabeder, Gernot Frischauf, Christine Grandal-d'Anglade, Aurora García-Vázquez, Ana Murtskhvaladze, Marine Saarma, Urmas Anijalg, Peeter Skrbinšek, Tomaž Bertorelle, Giorgio Gasparian, Boris Bar-Oz, Guy Pinhasi, Ron Slatkin, Montgomery Dalén, Love Shapiro, Beth Hofreiter, Michael 2018-09-26T19:36:45.000+02:00 http://nbn-resolving.org/urn:nbn:nl:ui:13-tb-o5uw https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:116799 unknown doi:10.5061/dryad.cr1496b/1 doi:10.5061/dryad.cr1496b/2 doi:10.5061/dryad.cr1496b/3 doi:10.5061/dryad.cr1496b/4 doi:10.5061/dryad.cr1496b/5 doi:10.5061/dryad.cr1496b/6 doi:10.5061/dryad.cr1496b/7 doi:10.5061/dryad.cr1496b/8 doi:10.5061/dryad.cr1496b/9 doi:10.5061/dryad.cr1496b/10 doi:10.5061/dryad.cr1496b/11 doi:10.5061/dryad.cr1496b/12 doi:10.5061/dryad.cr1496b/13 doi:10.5061/dryad.cr1496b/14 doi:10.5061/dryad.cr1496b/15 doi:10.5061/dryad.cr1496b/16 doi:10.5061/dryad.cr1496b/17 doi:10.5061/dryad.cr1496b/18 doi:10.1038/s41559-018-0654-8 http://nbn-resolving.org/urn:nbn:nl:ui:13-tb-o5uw doi:10.5061/dryad.cr1496b https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:116799 OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf Life sciences medicine and health care 2018 ftdans https://doi.org/10.5061/dryad.cr1496b/110.5061/dryad.cr1496b/210.5061/dryad.cr1496b/310.5061/dryad.cr1496b/410.5061/dryad.cr1496b/510.5061/dryad.cr1496b/610.5061/dryad.cr1496b/710.5061/dryad.cr1496b/810.5061/dryad.cr1496b/910.5061/dryad.cr1496b/1010.5061/ 2023-06-13T13:33:43Z Although many large mammal species went extinct at the end of the Pleistocene epoch, their DNA may persist due to past episodes of interspecies admixture. However, direct empirical evidence of the persistence of ancient alleles remains scarce. Here, we present multifold coverage genomic data from four Late Pleistocene cave bears (Ursus spelaeus complex) and show that cave bears hybridized with brown bears (Ursus arctos) during the Pleistocene. We develop an approach to assess both the directionality and relative timing of gene flow. We find that segments of cave bear DNA still persist in the genomes of living brown bears, with cave bears contributing 0.9 to 2.4% of the genomes of all brown bears investigated. Our results show that even though extinction is typically considered as absolute, following admixture, fragments of the gene pool of extinct species can survive for tens of thousands of years in the genomes of extant recipient species. Other/Unknown Material Ursus arctos Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen) Pedobiologia 91-92 150807 |
institution |
Open Polar |
collection |
Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen) |
op_collection_id |
ftdans |
language |
unknown |
topic |
Life sciences medicine and health care |
spellingShingle |
Life sciences medicine and health care Barlow, Axel Cahill, James A. Hartmann, Stefanie Theunert, Christoph Xenikoudakis, Georgios Fortes, Gloria G. Paijmans, Johanna L. A. Rabeder, Gernot Frischauf, Christine Grandal-d'Anglade, Aurora García-Vázquez, Ana Murtskhvaladze, Marine Saarma, Urmas Anijalg, Peeter Skrbinšek, Tomaž Bertorelle, Giorgio Gasparian, Boris Bar-Oz, Guy Pinhasi, Ron Slatkin, Montgomery Dalén, Love Shapiro, Beth Hofreiter, Michael Data from: Partial genomic survival of cave bears in living brown bears |
topic_facet |
Life sciences medicine and health care |
description |
Although many large mammal species went extinct at the end of the Pleistocene epoch, their DNA may persist due to past episodes of interspecies admixture. However, direct empirical evidence of the persistence of ancient alleles remains scarce. Here, we present multifold coverage genomic data from four Late Pleistocene cave bears (Ursus spelaeus complex) and show that cave bears hybridized with brown bears (Ursus arctos) during the Pleistocene. We develop an approach to assess both the directionality and relative timing of gene flow. We find that segments of cave bear DNA still persist in the genomes of living brown bears, with cave bears contributing 0.9 to 2.4% of the genomes of all brown bears investigated. Our results show that even though extinction is typically considered as absolute, following admixture, fragments of the gene pool of extinct species can survive for tens of thousands of years in the genomes of extant recipient species. |
author |
Barlow, Axel Cahill, James A. Hartmann, Stefanie Theunert, Christoph Xenikoudakis, Georgios Fortes, Gloria G. Paijmans, Johanna L. A. Rabeder, Gernot Frischauf, Christine Grandal-d'Anglade, Aurora García-Vázquez, Ana Murtskhvaladze, Marine Saarma, Urmas Anijalg, Peeter Skrbinšek, Tomaž Bertorelle, Giorgio Gasparian, Boris Bar-Oz, Guy Pinhasi, Ron Slatkin, Montgomery Dalén, Love Shapiro, Beth Hofreiter, Michael |
author_facet |
Barlow, Axel Cahill, James A. Hartmann, Stefanie Theunert, Christoph Xenikoudakis, Georgios Fortes, Gloria G. Paijmans, Johanna L. A. Rabeder, Gernot Frischauf, Christine Grandal-d'Anglade, Aurora García-Vázquez, Ana Murtskhvaladze, Marine Saarma, Urmas Anijalg, Peeter Skrbinšek, Tomaž Bertorelle, Giorgio Gasparian, Boris Bar-Oz, Guy Pinhasi, Ron Slatkin, Montgomery Dalén, Love Shapiro, Beth Hofreiter, Michael |
author_sort |
Barlow, Axel |
title |
Data from: Partial genomic survival of cave bears in living brown bears |
title_short |
Data from: Partial genomic survival of cave bears in living brown bears |
title_full |
Data from: Partial genomic survival of cave bears in living brown bears |
title_fullStr |
Data from: Partial genomic survival of cave bears in living brown bears |
title_full_unstemmed |
Data from: Partial genomic survival of cave bears in living brown bears |
title_sort |
data from: partial genomic survival of cave bears in living brown bears |
publishDate |
2018 |
url |
http://nbn-resolving.org/urn:nbn:nl:ui:13-tb-o5uw https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:116799 |
genre |
Ursus arctos |
genre_facet |
Ursus arctos |
op_relation |
doi:10.5061/dryad.cr1496b/1 doi:10.5061/dryad.cr1496b/2 doi:10.5061/dryad.cr1496b/3 doi:10.5061/dryad.cr1496b/4 doi:10.5061/dryad.cr1496b/5 doi:10.5061/dryad.cr1496b/6 doi:10.5061/dryad.cr1496b/7 doi:10.5061/dryad.cr1496b/8 doi:10.5061/dryad.cr1496b/9 doi:10.5061/dryad.cr1496b/10 doi:10.5061/dryad.cr1496b/11 doi:10.5061/dryad.cr1496b/12 doi:10.5061/dryad.cr1496b/13 doi:10.5061/dryad.cr1496b/14 doi:10.5061/dryad.cr1496b/15 doi:10.5061/dryad.cr1496b/16 doi:10.5061/dryad.cr1496b/17 doi:10.5061/dryad.cr1496b/18 doi:10.1038/s41559-018-0654-8 http://nbn-resolving.org/urn:nbn:nl:ui:13-tb-o5uw doi:10.5061/dryad.cr1496b https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:116799 |
op_rights |
OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf |
op_doi |
https://doi.org/10.5061/dryad.cr1496b/110.5061/dryad.cr1496b/210.5061/dryad.cr1496b/310.5061/dryad.cr1496b/410.5061/dryad.cr1496b/510.5061/dryad.cr1496b/610.5061/dryad.cr1496b/710.5061/dryad.cr1496b/810.5061/dryad.cr1496b/910.5061/dryad.cr1496b/1010.5061/ |
container_title |
Pedobiologia |
container_volume |
91-92 |
container_start_page |
150807 |
_version_ |
1770274056748138496 |