Data from: SNP discovery in European lobster (Homarus gammarus) using RAD sequencing
The European lobster (Homarus gammarus) is a decapod crustacean with a high market value and therefore their fisheries are of major importance to the economies they support. However, over-exploitation has led to profound stock declines in some regions such as Scandinavia and the Mediterranean. To ma...
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ftdans:oai:easy.dans.knaw.nl:easy-dataset:113953 2023-07-02T03:32:10+02:00 Data from: SNP discovery in European lobster (Homarus gammarus) using RAD sequencing Jenkins, Tom L. Ellis, Charlie D. Stevens, Jamie R. 2018-02-03T18:43:41.000+01:00 http://nbn-resolving.org/urn:nbn:nl:ui:13-2j-0sa9 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:113953 unknown doi:10.5061/dryad.2pc6v/1 doi:10.1007/s12686-018-1001-8 http://nbn-resolving.org/urn:nbn:nl:ui:13-2j-0sa9 doi:10.5061/dryad.2pc6v https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:113953 OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf Life sciences medicine and health care 2018 ftdans https://doi.org/10.5061/dryad.2pc6v/110.1007/s12686-018-1001-810.5061/dryad.2pc6v 2023-06-13T13:32:44Z The European lobster (Homarus gammarus) is a decapod crustacean with a high market value and therefore their fisheries are of major importance to the economies they support. However, over-exploitation has led to profound stock declines in some regions such as Scandinavia and the Mediterranean. To manage this resource sustainably, knowledge of population structure and connectivity is crucial to inform management about dispersal, recruitment, stock identification and food traceability. We used restriction-site associated DNA sequencing to develop novel SNP markers from 55 individuals encompassing much of the species range; SNPs were quality filtered, ranked using F-statistics and the top 96 SNPs adequate for primer design were retained. SNP markers were developed with the aim of maximising the power to detect genetic differentiation between: (i) Atlantic and Mediterranean lobsters and (ii) Atlantic lobsters. This panel of SNPs provides a useful resource for future studies of population genetic structure and assignment in H. gammarus. Other/Unknown Material European lobster Homarus gammarus Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen) |
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Open Polar |
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Data Archiving and Networked Services (DANS): EASY (KNAW - Koninklijke Nederlandse Akademie van Wetenschappen) |
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ftdans |
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unknown |
topic |
Life sciences medicine and health care |
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Life sciences medicine and health care Jenkins, Tom L. Ellis, Charlie D. Stevens, Jamie R. Data from: SNP discovery in European lobster (Homarus gammarus) using RAD sequencing |
topic_facet |
Life sciences medicine and health care |
description |
The European lobster (Homarus gammarus) is a decapod crustacean with a high market value and therefore their fisheries are of major importance to the economies they support. However, over-exploitation has led to profound stock declines in some regions such as Scandinavia and the Mediterranean. To manage this resource sustainably, knowledge of population structure and connectivity is crucial to inform management about dispersal, recruitment, stock identification and food traceability. We used restriction-site associated DNA sequencing to develop novel SNP markers from 55 individuals encompassing much of the species range; SNPs were quality filtered, ranked using F-statistics and the top 96 SNPs adequate for primer design were retained. SNP markers were developed with the aim of maximising the power to detect genetic differentiation between: (i) Atlantic and Mediterranean lobsters and (ii) Atlantic lobsters. This panel of SNPs provides a useful resource for future studies of population genetic structure and assignment in H. gammarus. |
author |
Jenkins, Tom L. Ellis, Charlie D. Stevens, Jamie R. |
author_facet |
Jenkins, Tom L. Ellis, Charlie D. Stevens, Jamie R. |
author_sort |
Jenkins, Tom L. |
title |
Data from: SNP discovery in European lobster (Homarus gammarus) using RAD sequencing |
title_short |
Data from: SNP discovery in European lobster (Homarus gammarus) using RAD sequencing |
title_full |
Data from: SNP discovery in European lobster (Homarus gammarus) using RAD sequencing |
title_fullStr |
Data from: SNP discovery in European lobster (Homarus gammarus) using RAD sequencing |
title_full_unstemmed |
Data from: SNP discovery in European lobster (Homarus gammarus) using RAD sequencing |
title_sort |
data from: snp discovery in european lobster (homarus gammarus) using rad sequencing |
publishDate |
2018 |
url |
http://nbn-resolving.org/urn:nbn:nl:ui:13-2j-0sa9 https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:113953 |
genre |
European lobster Homarus gammarus |
genre_facet |
European lobster Homarus gammarus |
op_relation |
doi:10.5061/dryad.2pc6v/1 doi:10.1007/s12686-018-1001-8 http://nbn-resolving.org/urn:nbn:nl:ui:13-2j-0sa9 doi:10.5061/dryad.2pc6v https://easy.dans.knaw.nl/ui/datasets/id/easy-dataset:113953 |
op_rights |
OPEN_ACCESS: The data are archived in Easy, they are accessible elsewhere through the DOI https://dans.knaw.nl/en/about/organisation-and-policy/legal-information/DANSLicence.pdf |
op_doi |
https://doi.org/10.5061/dryad.2pc6v/110.1007/s12686-018-1001-810.5061/dryad.2pc6v |
_version_ |
1770271677240836096 |