Characterization of polymorphic microsatellite loci in the Antarctic krill Euphausia superba
Abstract Background The Antarctic krill, Euphausia superba is a pelagic crustacean, abundant in high-density swarms (10 000 – 30 000 ind/m2) with a circumpolar distribution and a key role in the food web of the Southern Ocean. Only three EST derived microsatellite markers have been used in previous...
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ftcsic:oai:digital.csic.es:10261/90418 2024-02-11T09:58:51+01:00 Characterization of polymorphic microsatellite loci in the Antarctic krill Euphausia superba Candeias, Rui Teixeira, Sara Duarte, Carlos M. Pearson, Gareth A. Fundação para a Ciência e a Tecnologia (Portugal) Ministerio de Economía y Competitividad (España) 2014-02-03 http://hdl.handle.net/10261/90418 https://doi.org/10.1186/1756-0500-7-73 https://doi.org/10.13039/501100001871 https://doi.org/10.13039/501100003329 en eng BioMed Central Publisher’s version http://dx.doi.org/10.1186/1756-0500-7-73 BMC Research Notes 7(1) : 73 (2014) http://hdl.handle.net/10261/90418 http://dx.doi.org/10.13039/501100001871 http://dx.doi.org/10.13039/501100003329 open artículo http://purl.org/coar/resource_type/c_6501 2014 ftcsic https://doi.org/10.1186/1756-0500-7-7310.13039/50110000187110.13039/501100003329 2024-01-16T09:55:50Z Abstract Background The Antarctic krill, Euphausia superba is a pelagic crustacean, abundant in high-density swarms (10 000 – 30 000 ind/m2) with a circumpolar distribution and a key role in the food web of the Southern Ocean. Only three EST derived microsatellite markers have been used in previous genetic studies, hence we developed additional highly polymorphic microsatellite markers to allow robust studies of the genetic variability and population differentiation within this species. Findings The microsatellite markers described here were obtained through an enriched genomic library, followed by 454 pyrosequencing. A total of 10 microsatellite markers were tested in 32 individuals from the Antarctic Peninsula. One of the tested loci was fixed for one allele while the other was variable. Of the remaining nine markers, seven showed no departure from Hardy-Weinberg equilibrium. The mean number of alleles was 14.9. Conclusions These markers open perspectives for population genetic studies of this species to unravel genetic structure, dispersal and population biology, vital information for future conservation. This study was supported by the Portuguese Science Foundation (FCT) through project PTCD/MAR/72630/2006 (GAP) and postdoctoral fellowship SFRH/BPD/39097/2007 (ST) and by the project ATOS funded by the Spanish Ministry of Economy and Competitivity (POL2006-00550/CTM). We thank the crew of R/V Hespérides, technicians from the UTM and cruise participants for help and support. Peer Reviewed Article in Journal/Newspaper Antarc* Antarctic Antarctic Krill Antarctic Peninsula Euphausia superba Southern Ocean Digital.CSIC (Spanish National Research Council) Antarctic Southern Ocean The Antarctic Antarctic Peninsula BMC Research Notes 7 1 73 |
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Digital.CSIC (Spanish National Research Council) |
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English |
description |
Abstract Background The Antarctic krill, Euphausia superba is a pelagic crustacean, abundant in high-density swarms (10 000 – 30 000 ind/m2) with a circumpolar distribution and a key role in the food web of the Southern Ocean. Only three EST derived microsatellite markers have been used in previous genetic studies, hence we developed additional highly polymorphic microsatellite markers to allow robust studies of the genetic variability and population differentiation within this species. Findings The microsatellite markers described here were obtained through an enriched genomic library, followed by 454 pyrosequencing. A total of 10 microsatellite markers were tested in 32 individuals from the Antarctic Peninsula. One of the tested loci was fixed for one allele while the other was variable. Of the remaining nine markers, seven showed no departure from Hardy-Weinberg equilibrium. The mean number of alleles was 14.9. Conclusions These markers open perspectives for population genetic studies of this species to unravel genetic structure, dispersal and population biology, vital information for future conservation. This study was supported by the Portuguese Science Foundation (FCT) through project PTCD/MAR/72630/2006 (GAP) and postdoctoral fellowship SFRH/BPD/39097/2007 (ST) and by the project ATOS funded by the Spanish Ministry of Economy and Competitivity (POL2006-00550/CTM). We thank the crew of R/V Hespérides, technicians from the UTM and cruise participants for help and support. Peer Reviewed |
author2 |
Fundação para a Ciência e a Tecnologia (Portugal) Ministerio de Economía y Competitividad (España) |
format |
Article in Journal/Newspaper |
author |
Candeias, Rui Teixeira, Sara Duarte, Carlos M. Pearson, Gareth A. |
spellingShingle |
Candeias, Rui Teixeira, Sara Duarte, Carlos M. Pearson, Gareth A. Characterization of polymorphic microsatellite loci in the Antarctic krill Euphausia superba |
author_facet |
Candeias, Rui Teixeira, Sara Duarte, Carlos M. Pearson, Gareth A. |
author_sort |
Candeias, Rui |
title |
Characterization of polymorphic microsatellite loci in the Antarctic krill Euphausia superba |
title_short |
Characterization of polymorphic microsatellite loci in the Antarctic krill Euphausia superba |
title_full |
Characterization of polymorphic microsatellite loci in the Antarctic krill Euphausia superba |
title_fullStr |
Characterization of polymorphic microsatellite loci in the Antarctic krill Euphausia superba |
title_full_unstemmed |
Characterization of polymorphic microsatellite loci in the Antarctic krill Euphausia superba |
title_sort |
characterization of polymorphic microsatellite loci in the antarctic krill euphausia superba |
publisher |
BioMed Central |
publishDate |
2014 |
url |
http://hdl.handle.net/10261/90418 https://doi.org/10.1186/1756-0500-7-73 https://doi.org/10.13039/501100001871 https://doi.org/10.13039/501100003329 |
geographic |
Antarctic Southern Ocean The Antarctic Antarctic Peninsula |
geographic_facet |
Antarctic Southern Ocean The Antarctic Antarctic Peninsula |
genre |
Antarc* Antarctic Antarctic Krill Antarctic Peninsula Euphausia superba Southern Ocean |
genre_facet |
Antarc* Antarctic Antarctic Krill Antarctic Peninsula Euphausia superba Southern Ocean |
op_relation |
Publisher’s version http://dx.doi.org/10.1186/1756-0500-7-73 BMC Research Notes 7(1) : 73 (2014) http://hdl.handle.net/10261/90418 http://dx.doi.org/10.13039/501100001871 http://dx.doi.org/10.13039/501100003329 |
op_rights |
open |
op_doi |
https://doi.org/10.1186/1756-0500-7-7310.13039/50110000187110.13039/501100003329 |
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BMC Research Notes |
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7 |
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1 |
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73 |
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1790594639861907456 |