On the way to specificity - Microbiome reflects sponge genetic cluster primarily in highly structured populations

This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. Most animals, including sponges (Porifera), have species-specific microbiomes. Which genetic or en...

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Published in:Molecular Ecology
Main Authors: Díez-Vives, Cristina, Taboada, S., Leiva, Carlos, Busch, Kathrin, Hentschel, Ute, Riesgo Gil, Ana
Format: Article in Journal/Newspaper
Language:unknown
Published: Wiley-Blackwell 2020
Subjects:
Online Access:http://hdl.handle.net/10261/235782
https://doi.org/10.1111/mec.15635
id ftcsic:oai:digital.csic.es:10261/235782
record_format openpolar
spelling ftcsic:oai:digital.csic.es:10261/235782 2024-02-11T09:58:46+01:00 On the way to specificity - Microbiome reflects sponge genetic cluster primarily in highly structured populations Díez-Vives, Cristina Taboada, S. Leiva, Carlos Busch, Kathrin Hentschel, Ute Riesgo Gil, Ana 2020 http://hdl.handle.net/10261/235782 https://doi.org/10.1111/mec.15635 unknown Wiley-Blackwell #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/EC/H2020/679849 info:eu-repo/grantAgreement/EC/H2020/796011 http://dx.doi.org/10.1111/mec.15635 Sí doi:10.1111/mec.15635 issn: 1365-294X Molecular Ecology 29(22): 4412-4427 (2020) http://hdl.handle.net/10261/235782 open Host specificity Microbiome Sponges artículo http://purl.org/coar/resource_type/c_6501 2020 ftcsic https://doi.org/10.1111/mec.15635 2024-01-16T11:05:46Z This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. Most animals, including sponges (Porifera), have species-specific microbiomes. Which genetic or environmental factors play major roles structuring the microbial community at the intraspecific level in sponges is, however, largely unknown. In this study, we tested whether geographic location or genetic structure of conspecific sponges influences their microbial assembly. For that, we used three sponge species with different rates of gene flow, and collected samples along their entire distribution range (two from the Mediterranean and one from the Southern Ocean) yielding a total of 393 samples. These three sponge species have been previously analysed by microsatellites or single nucleotide polymorphisms, and here we investigate their microbiomes by amplicon sequencing of the microbial 16S rRNA gene. The sponge Petrosia ficiformis, with highly isolated populations (low gene flow), showed a stronger influence of the host genetic distance on the microbial composition than the spatial distance. Host-specificity was therefore detected at the genotypic level, with individuals belonging to the same host genetic cluster harbouring more similar microbiomes than distant ones. On the contrary, the microbiome of Ircinia fasciculata and Dendrilla antarctica - both with weak population structure (high gene flow) - seemed influenced by location rather than by host genetic distance. Our results suggest that in sponge species with high population structure, the host genetic cluster influence the microbial community more than the geographic location. European Union’s Horizon 2020 Research and Innovation Actions, Grant/Award Number: 679849; Marie Skłodowska-Curie Individual Fellowships, Grant/Award Number: 796011 Article in Journal/Newspaper Antarc* Antarctica Southern Ocean Digital.CSIC (Spanish National Research Council) Southern Ocean Molecular Ecology 29 22 4412 4427
institution Open Polar
collection Digital.CSIC (Spanish National Research Council)
op_collection_id ftcsic
language unknown
topic Host specificity
Microbiome
Sponges
spellingShingle Host specificity
Microbiome
Sponges
Díez-Vives, Cristina
Taboada, S.
Leiva, Carlos
Busch, Kathrin
Hentschel, Ute
Riesgo Gil, Ana
On the way to specificity - Microbiome reflects sponge genetic cluster primarily in highly structured populations
topic_facet Host specificity
Microbiome
Sponges
description This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. Most animals, including sponges (Porifera), have species-specific microbiomes. Which genetic or environmental factors play major roles structuring the microbial community at the intraspecific level in sponges is, however, largely unknown. In this study, we tested whether geographic location or genetic structure of conspecific sponges influences their microbial assembly. For that, we used three sponge species with different rates of gene flow, and collected samples along their entire distribution range (two from the Mediterranean and one from the Southern Ocean) yielding a total of 393 samples. These three sponge species have been previously analysed by microsatellites or single nucleotide polymorphisms, and here we investigate their microbiomes by amplicon sequencing of the microbial 16S rRNA gene. The sponge Petrosia ficiformis, with highly isolated populations (low gene flow), showed a stronger influence of the host genetic distance on the microbial composition than the spatial distance. Host-specificity was therefore detected at the genotypic level, with individuals belonging to the same host genetic cluster harbouring more similar microbiomes than distant ones. On the contrary, the microbiome of Ircinia fasciculata and Dendrilla antarctica - both with weak population structure (high gene flow) - seemed influenced by location rather than by host genetic distance. Our results suggest that in sponge species with high population structure, the host genetic cluster influence the microbial community more than the geographic location. European Union’s Horizon 2020 Research and Innovation Actions, Grant/Award Number: 679849; Marie Skłodowska-Curie Individual Fellowships, Grant/Award Number: 796011
format Article in Journal/Newspaper
author Díez-Vives, Cristina
Taboada, S.
Leiva, Carlos
Busch, Kathrin
Hentschel, Ute
Riesgo Gil, Ana
author_facet Díez-Vives, Cristina
Taboada, S.
Leiva, Carlos
Busch, Kathrin
Hentschel, Ute
Riesgo Gil, Ana
author_sort Díez-Vives, Cristina
title On the way to specificity - Microbiome reflects sponge genetic cluster primarily in highly structured populations
title_short On the way to specificity - Microbiome reflects sponge genetic cluster primarily in highly structured populations
title_full On the way to specificity - Microbiome reflects sponge genetic cluster primarily in highly structured populations
title_fullStr On the way to specificity - Microbiome reflects sponge genetic cluster primarily in highly structured populations
title_full_unstemmed On the way to specificity - Microbiome reflects sponge genetic cluster primarily in highly structured populations
title_sort on the way to specificity - microbiome reflects sponge genetic cluster primarily in highly structured populations
publisher Wiley-Blackwell
publishDate 2020
url http://hdl.handle.net/10261/235782
https://doi.org/10.1111/mec.15635
geographic Southern Ocean
geographic_facet Southern Ocean
genre Antarc*
Antarctica
Southern Ocean
genre_facet Antarc*
Antarctica
Southern Ocean
op_relation #PLACEHOLDER_PARENT_METADATA_VALUE#
info:eu-repo/grantAgreement/EC/H2020/679849
info:eu-repo/grantAgreement/EC/H2020/796011
http://dx.doi.org/10.1111/mec.15635

doi:10.1111/mec.15635
issn: 1365-294X
Molecular Ecology 29(22): 4412-4427 (2020)
http://hdl.handle.net/10261/235782
op_rights open
op_doi https://doi.org/10.1111/mec.15635
container_title Molecular Ecology
container_volume 29
container_issue 22
container_start_page 4412
op_container_end_page 4427
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