Identifying microbial life in rocks: Insights from population morphometry

The identification of cellular life in the rock record is problematic, since microbial life forms, and particularly bacteria, lack sufficient morphologic complexity to be effectively distinguished from certain abiogenic features in rocks. Examples include organic pore-fillings, hydrocarbon-containin...

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Published in:Geobiology
Main Authors: Rouillard, Joti, García Ruiz, Juan Manuel, Kah, Linda, Gérard, Emmanuelle, Barrier, Laurie, Nabhan, Sami, Gong, Jian, Van Zuilen, Mark A.
Other Authors: Ministerio de Economía y Competitividad (España), Garcia Ruiz, Juan Manuel
Format: Article in Journal/Newspaper
Language:English
Published: Wiley-VCH 2019
Subjects:
Online Access:http://hdl.handle.net/10261/211538
https://doi.org/10.1111/gbi.12377
https://doi.org/10.13039/501100003329
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spelling ftcsic:oai:digital.csic.es:10261/211538 2024-02-11T10:02:17+01:00 Identifying microbial life in rocks: Insights from population morphometry Rouillard, Joti García Ruiz, Juan Manuel Kah, Linda Gérard, Emmanuelle Barrier, Laurie Nabhan, Sami Gong, Jian Van Zuilen, Mark A. Ministerio de Economía y Competitividad (España) Garcia Ruiz, Juan Manuel 2019-12-26 http://hdl.handle.net/10261/211538 https://doi.org/10.1111/gbi.12377 https://doi.org/10.13039/501100003329 en eng Wiley-VCH #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/CGL2016-78971-P info:eu-repo/grantAgreement/EC/H2020/646894 info:eu-repo/grantAgreement/EC/FP7/340863 Publisher's version https://doi.org/10.1111/gbi.12377 Sí Geobiology 18 (3): 282-305 (2020) 1472-4677 http://hdl.handle.net/10261/211538 doi:10.1111/gbi.12377 http://dx.doi.org/10.13039/501100003329 open artículo http://purl.org/coar/resource_type/c_6501 2019 ftcsic https://doi.org/10.1111/gbi.1237710.13039/501100003329 2024-01-16T10:53:56Z The identification of cellular life in the rock record is problematic, since microbial life forms, and particularly bacteria, lack sufficient morphologic complexity to be effectively distinguished from certain abiogenic features in rocks. Examples include organic pore-fillings, hydrocarbon-containing fluid inclusions, organic coatings on exfoliated crystals and biomimetic mineral aggregates (biomorphs). This has led to the interpretation and re-interpretation of individual microstructures in the rock record. The morphologic description of entire populations of microstructures, however, may provide support for distinguishing between preserved micro-organisms and abiogenic objects. Here, we present a statistical approach based on quantitative morphological description of populations of microstructures. Images of modern microbial populations were compared to images of two relevant types of abiogenic microstructures: interstitial spaces and silica–carbonate biomorphs. For the populations of these three systems, the size, circularity, and solidity of individual particles were calculated. Subsequently, the mean/SD, skewness, and kurtosis of the statistical distributions of these parameters were established. This allowed the qualitative and quantitative comparison of distributions in these three systems. In addition, the fractal dimension and lacunarity of the populations were determined. In total, 11 parameters, independent of absolute size or shape, were used to characterize each population of microstructures. Using discriminant analysis with parameter subsets, it was found that size and shape distributions are typically sufficient to discriminate populations of biologic and abiogenic microstructures. Analysis of ancient, yet unambiguously biologic, samples (1.0 Ga Angmaat Formation, Baffin Island, Canada) suggests that taphonomic effects can alter morphometric characteristics and complicate image analysis; therefore, a wider range of microfossil assemblages should be studied in the future before automated analyses ... Article in Journal/Newspaper Baffin Island Baffin Digital.CSIC (Spanish National Research Council) Baffin Island Canada Geobiology 18 3 282 305
institution Open Polar
collection Digital.CSIC (Spanish National Research Council)
op_collection_id ftcsic
language English
description The identification of cellular life in the rock record is problematic, since microbial life forms, and particularly bacteria, lack sufficient morphologic complexity to be effectively distinguished from certain abiogenic features in rocks. Examples include organic pore-fillings, hydrocarbon-containing fluid inclusions, organic coatings on exfoliated crystals and biomimetic mineral aggregates (biomorphs). This has led to the interpretation and re-interpretation of individual microstructures in the rock record. The morphologic description of entire populations of microstructures, however, may provide support for distinguishing between preserved micro-organisms and abiogenic objects. Here, we present a statistical approach based on quantitative morphological description of populations of microstructures. Images of modern microbial populations were compared to images of two relevant types of abiogenic microstructures: interstitial spaces and silica–carbonate biomorphs. For the populations of these three systems, the size, circularity, and solidity of individual particles were calculated. Subsequently, the mean/SD, skewness, and kurtosis of the statistical distributions of these parameters were established. This allowed the qualitative and quantitative comparison of distributions in these three systems. In addition, the fractal dimension and lacunarity of the populations were determined. In total, 11 parameters, independent of absolute size or shape, were used to characterize each population of microstructures. Using discriminant analysis with parameter subsets, it was found that size and shape distributions are typically sufficient to discriminate populations of biologic and abiogenic microstructures. Analysis of ancient, yet unambiguously biologic, samples (1.0 Ga Angmaat Formation, Baffin Island, Canada) suggests that taphonomic effects can alter morphometric characteristics and complicate image analysis; therefore, a wider range of microfossil assemblages should be studied in the future before automated analyses ...
author2 Ministerio de Economía y Competitividad (España)
Garcia Ruiz, Juan Manuel
format Article in Journal/Newspaper
author Rouillard, Joti
García Ruiz, Juan Manuel
Kah, Linda
Gérard, Emmanuelle
Barrier, Laurie
Nabhan, Sami
Gong, Jian
Van Zuilen, Mark A.
spellingShingle Rouillard, Joti
García Ruiz, Juan Manuel
Kah, Linda
Gérard, Emmanuelle
Barrier, Laurie
Nabhan, Sami
Gong, Jian
Van Zuilen, Mark A.
Identifying microbial life in rocks: Insights from population morphometry
author_facet Rouillard, Joti
García Ruiz, Juan Manuel
Kah, Linda
Gérard, Emmanuelle
Barrier, Laurie
Nabhan, Sami
Gong, Jian
Van Zuilen, Mark A.
author_sort Rouillard, Joti
title Identifying microbial life in rocks: Insights from population morphometry
title_short Identifying microbial life in rocks: Insights from population morphometry
title_full Identifying microbial life in rocks: Insights from population morphometry
title_fullStr Identifying microbial life in rocks: Insights from population morphometry
title_full_unstemmed Identifying microbial life in rocks: Insights from population morphometry
title_sort identifying microbial life in rocks: insights from population morphometry
publisher Wiley-VCH
publishDate 2019
url http://hdl.handle.net/10261/211538
https://doi.org/10.1111/gbi.12377
https://doi.org/10.13039/501100003329
geographic Baffin Island
Canada
geographic_facet Baffin Island
Canada
genre Baffin Island
Baffin
genre_facet Baffin Island
Baffin
op_relation #PLACEHOLDER_PARENT_METADATA_VALUE#
info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/CGL2016-78971-P
info:eu-repo/grantAgreement/EC/H2020/646894
info:eu-repo/grantAgreement/EC/FP7/340863
Publisher's version
https://doi.org/10.1111/gbi.12377

Geobiology 18 (3): 282-305 (2020)
1472-4677
http://hdl.handle.net/10261/211538
doi:10.1111/gbi.12377
http://dx.doi.org/10.13039/501100003329
op_rights open
op_doi https://doi.org/10.1111/gbi.1237710.13039/501100003329
container_title Geobiology
container_volume 18
container_issue 3
container_start_page 282
op_container_end_page 305
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