Global Trends in Marine Plankton Diversity across Kingdoms of Life
35 pages, 18 figures, 1 table, supplementary information https://doi.org/10.1016/j.cell.2019.10.008.-- Raw reads of Tara Oceans are deposited at the European Nucleotide Archive (ENA). In particular, newly released 18S rRNA gene metabarcoding reads are available under the number ENA: PRJEB9737. ENA r...
Published in: | Cell |
---|---|
Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Other Authors: | , |
Format: | Article in Journal/Newspaper |
Language: | unknown |
Published: |
Elsevier
2019
|
Subjects: | |
Online Access: | http://hdl.handle.net/10261/197542 https://doi.org/10.1016/j.cell.2019.10.008 https://doi.org/10.13039/501100000780 https://doi.org/10.13039/501100003329 |
id |
ftcsic:oai:digital.csic.es:10261/197542 |
---|---|
record_format |
openpolar |
spelling |
ftcsic:oai:digital.csic.es:10261/197542 2024-02-11T10:01:42+01:00 Global Trends in Marine Plankton Diversity across Kingdoms of Life Ibarbalz, Federico M. Henry, Nicolas Brandão, Manoela C. Martini, Séverine Busseni, Greta Byrne, Hannah Coelho, Luis Pedro Endo, Hisashi Gasol, Josep M. Gregory, Ann C. Mahé, Frédéric Rigonato, Janaina Royo-Llonch, Marta Salazar, Guillem Sanz-Sáez, Isabel Scalco, Eleonora Soviadan, Yawouvi Dodji Zayed, Ahmed A. Zingone, Adriana Labadie, Karine Ferland, Joannie Marec, Claudie Kandels‐Lewis, Stefanie Picheral, Marc Dimier, Céline Poulain, Julie Pisarev, Sergey Carmichael, Margaux Pesant, Stéphane Babin, Marcel Boss, Emmanuel Iudicone, Daniele Jaillon, Olivier Acinas, Silvia G. Ogata, Hiroyuki Pelletier, Eric Stemmann, Lars Sullivan, Matthew B. Sunagawa, Shinichi Bopp, Laurent Vargas, Colomban de Karp-Boss, Lee Wincker, Patrick Lombard, Fabien Bowler, Chris Zinger, Lucie European Commission Ministerio de Economía y Competitividad (España) 2019-11 http://hdl.handle.net/10261/197542 https://doi.org/10.1016/j.cell.2019.10.008 https://doi.org/10.13039/501100000780 https://doi.org/10.13039/501100003329 unknown Elsevier #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/CTM2017-87736-R info:eu-repo/grantAgreement/EC/FP7/835067 Publisher's version https://doi.org/10.1016/j.cell.2019.10.008 Sí doi:10.1016/j.cell.2019.10.008 issn: 0092-8674 e-issn: 1097-4172 Cell 179(5): 1084-1097 (2019) http://hdl.handle.net/10261/197542 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/501100003329 31730851 open artículo http://purl.org/coar/resource_type/c_6501 2019 ftcsic https://doi.org/10.1016/j.cell.2019.10.00810.13039/50110000078010.13039/501100003329 2024-01-16T10:46:57Z 35 pages, 18 figures, 1 table, supplementary information https://doi.org/10.1016/j.cell.2019.10.008.-- Raw reads of Tara Oceans are deposited at the European Nucleotide Archive (ENA). In particular, newly released 18S rRNA gene metabarcoding reads are available under the number ENA: PRJEB9737. ENA references for the metagenomics reads corresponding to the size fraction < 0.22 μm (for prokaryotic viruses) analyzed in this study are included in Gregory et al. (2019); see their Table S3. ENA references for the metagenomics reads corresponding to the size fraction 0.22-1.6/3 μm (for prokaryotes and giruses) correspond to Salazar et al. (2019) (see https://zenodo.org/record/3473199). Imaging datasets from the nets are available through the collaborative web application and repository EcoTaxa (Picheral et al., 2017) under the address https://ecotaxa.obs-vlfr.fr/prj/412 for regent data, within the 3 projects https://ecotaxa.obs-vlfr.fr/prj/397, https://ecotaxa.obs-vlfr.fr/prj/398, https://ecotaxa.obs-vlfr.fr/prj/395 for bongo data, and within the 2 projects https://ecotaxa.obs-vlfr.fr/prj/377 and https://ecotaxa.obs-vlfr.fr/prj/378 for WP2 data. A table with Shannon values and multiple samples identifiers, plus a table with flow cytometry data split in six groups are available (https://doi.org/10.17632/p9r9wttjkm.1). Contextual data from the Tara Oceans expedition, including those that are newly released from the Arctic Ocean, are available at https://doi.org/10.1594/PANGAEA.875582 The ocean is home to myriad small planktonic organisms that underpin the functioning of marine ecosystems. However, their spatial patterns of diversity and the underlying drivers remain poorly known, precluding projections of their responses to global changes. Here we investigate the latitudinal gradients and global predictors of plankton diversity across archaea, bacteria, eukaryotes, and major virus clades using both molecular and imaging data from Tara Oceans. We show a decline of diversity for most planktonic groups toward the ... Article in Journal/Newspaper Arctic Arctic Ocean Digital.CSIC (Spanish National Research Council) Arctic Arctic Ocean Cell 179 5 1084 1097.e21 |
institution |
Open Polar |
collection |
Digital.CSIC (Spanish National Research Council) |
op_collection_id |
ftcsic |
language |
unknown |
description |
35 pages, 18 figures, 1 table, supplementary information https://doi.org/10.1016/j.cell.2019.10.008.-- Raw reads of Tara Oceans are deposited at the European Nucleotide Archive (ENA). In particular, newly released 18S rRNA gene metabarcoding reads are available under the number ENA: PRJEB9737. ENA references for the metagenomics reads corresponding to the size fraction < 0.22 μm (for prokaryotic viruses) analyzed in this study are included in Gregory et al. (2019); see their Table S3. ENA references for the metagenomics reads corresponding to the size fraction 0.22-1.6/3 μm (for prokaryotes and giruses) correspond to Salazar et al. (2019) (see https://zenodo.org/record/3473199). Imaging datasets from the nets are available through the collaborative web application and repository EcoTaxa (Picheral et al., 2017) under the address https://ecotaxa.obs-vlfr.fr/prj/412 for regent data, within the 3 projects https://ecotaxa.obs-vlfr.fr/prj/397, https://ecotaxa.obs-vlfr.fr/prj/398, https://ecotaxa.obs-vlfr.fr/prj/395 for bongo data, and within the 2 projects https://ecotaxa.obs-vlfr.fr/prj/377 and https://ecotaxa.obs-vlfr.fr/prj/378 for WP2 data. A table with Shannon values and multiple samples identifiers, plus a table with flow cytometry data split in six groups are available (https://doi.org/10.17632/p9r9wttjkm.1). Contextual data from the Tara Oceans expedition, including those that are newly released from the Arctic Ocean, are available at https://doi.org/10.1594/PANGAEA.875582 The ocean is home to myriad small planktonic organisms that underpin the functioning of marine ecosystems. However, their spatial patterns of diversity and the underlying drivers remain poorly known, precluding projections of their responses to global changes. Here we investigate the latitudinal gradients and global predictors of plankton diversity across archaea, bacteria, eukaryotes, and major virus clades using both molecular and imaging data from Tara Oceans. We show a decline of diversity for most planktonic groups toward the ... |
author2 |
European Commission Ministerio de Economía y Competitividad (España) |
format |
Article in Journal/Newspaper |
author |
Ibarbalz, Federico M. Henry, Nicolas Brandão, Manoela C. Martini, Séverine Busseni, Greta Byrne, Hannah Coelho, Luis Pedro Endo, Hisashi Gasol, Josep M. Gregory, Ann C. Mahé, Frédéric Rigonato, Janaina Royo-Llonch, Marta Salazar, Guillem Sanz-Sáez, Isabel Scalco, Eleonora Soviadan, Yawouvi Dodji Zayed, Ahmed A. Zingone, Adriana Labadie, Karine Ferland, Joannie Marec, Claudie Kandels‐Lewis, Stefanie Picheral, Marc Dimier, Céline Poulain, Julie Pisarev, Sergey Carmichael, Margaux Pesant, Stéphane Babin, Marcel Boss, Emmanuel Iudicone, Daniele Jaillon, Olivier Acinas, Silvia G. Ogata, Hiroyuki Pelletier, Eric Stemmann, Lars Sullivan, Matthew B. Sunagawa, Shinichi Bopp, Laurent Vargas, Colomban de Karp-Boss, Lee Wincker, Patrick Lombard, Fabien Bowler, Chris Zinger, Lucie |
spellingShingle |
Ibarbalz, Federico M. Henry, Nicolas Brandão, Manoela C. Martini, Séverine Busseni, Greta Byrne, Hannah Coelho, Luis Pedro Endo, Hisashi Gasol, Josep M. Gregory, Ann C. Mahé, Frédéric Rigonato, Janaina Royo-Llonch, Marta Salazar, Guillem Sanz-Sáez, Isabel Scalco, Eleonora Soviadan, Yawouvi Dodji Zayed, Ahmed A. Zingone, Adriana Labadie, Karine Ferland, Joannie Marec, Claudie Kandels‐Lewis, Stefanie Picheral, Marc Dimier, Céline Poulain, Julie Pisarev, Sergey Carmichael, Margaux Pesant, Stéphane Babin, Marcel Boss, Emmanuel Iudicone, Daniele Jaillon, Olivier Acinas, Silvia G. Ogata, Hiroyuki Pelletier, Eric Stemmann, Lars Sullivan, Matthew B. Sunagawa, Shinichi Bopp, Laurent Vargas, Colomban de Karp-Boss, Lee Wincker, Patrick Lombard, Fabien Bowler, Chris Zinger, Lucie Global Trends in Marine Plankton Diversity across Kingdoms of Life |
author_facet |
Ibarbalz, Federico M. Henry, Nicolas Brandão, Manoela C. Martini, Séverine Busseni, Greta Byrne, Hannah Coelho, Luis Pedro Endo, Hisashi Gasol, Josep M. Gregory, Ann C. Mahé, Frédéric Rigonato, Janaina Royo-Llonch, Marta Salazar, Guillem Sanz-Sáez, Isabel Scalco, Eleonora Soviadan, Yawouvi Dodji Zayed, Ahmed A. Zingone, Adriana Labadie, Karine Ferland, Joannie Marec, Claudie Kandels‐Lewis, Stefanie Picheral, Marc Dimier, Céline Poulain, Julie Pisarev, Sergey Carmichael, Margaux Pesant, Stéphane Babin, Marcel Boss, Emmanuel Iudicone, Daniele Jaillon, Olivier Acinas, Silvia G. Ogata, Hiroyuki Pelletier, Eric Stemmann, Lars Sullivan, Matthew B. Sunagawa, Shinichi Bopp, Laurent Vargas, Colomban de Karp-Boss, Lee Wincker, Patrick Lombard, Fabien Bowler, Chris Zinger, Lucie |
author_sort |
Ibarbalz, Federico M. |
title |
Global Trends in Marine Plankton Diversity across Kingdoms of Life |
title_short |
Global Trends in Marine Plankton Diversity across Kingdoms of Life |
title_full |
Global Trends in Marine Plankton Diversity across Kingdoms of Life |
title_fullStr |
Global Trends in Marine Plankton Diversity across Kingdoms of Life |
title_full_unstemmed |
Global Trends in Marine Plankton Diversity across Kingdoms of Life |
title_sort |
global trends in marine plankton diversity across kingdoms of life |
publisher |
Elsevier |
publishDate |
2019 |
url |
http://hdl.handle.net/10261/197542 https://doi.org/10.1016/j.cell.2019.10.008 https://doi.org/10.13039/501100000780 https://doi.org/10.13039/501100003329 |
geographic |
Arctic Arctic Ocean |
geographic_facet |
Arctic Arctic Ocean |
genre |
Arctic Arctic Ocean |
genre_facet |
Arctic Arctic Ocean |
op_relation |
#PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/CTM2017-87736-R info:eu-repo/grantAgreement/EC/FP7/835067 Publisher's version https://doi.org/10.1016/j.cell.2019.10.008 Sí doi:10.1016/j.cell.2019.10.008 issn: 0092-8674 e-issn: 1097-4172 Cell 179(5): 1084-1097 (2019) http://hdl.handle.net/10261/197542 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/501100003329 31730851 |
op_rights |
open |
op_doi |
https://doi.org/10.1016/j.cell.2019.10.00810.13039/50110000078010.13039/501100003329 |
container_title |
Cell |
container_volume |
179 |
container_issue |
5 |
container_start_page |
1084 |
op_container_end_page |
1097.e21 |
_version_ |
1790597511064322048 |