Detection of ice core particles via deep neural networks

Insoluble particles in ice cores record signatures of past climate parameters like vegetation dynamics, volcanic activity, and aridity. For some of them, the analytical detection relies on intensive bench microscopy investigation and requires dedicated sample preparation steps. Both are laborious, r...

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Published in:The Cryosphere
Main Authors: Maffezzoli, Niccolò, Cook, Eliza, Bilt, Willem G. M., Støren, Eivind N., Festi, Daniela, Muthreich, Florian, Seddon, Alistair W. R., Burgay, François, Baccolo, Giovanni, Mygind, Amalie R. F., Petersen, Troels, Spolaor, Andrea, Vascon, Sebastiano, Pelillo, Marcello, Ferretti, Patrizia, Reis, Rafael S., Simões, Jefferson C., Ronen, Yuval, Delmonte, Barbara, Viccaro, Marco, Steffensen, Jørgen Peder, Dahl-Jensen, Dorthe, Nisancioglu, Kerim H., Barbante, Carlo
Format: Text
Language:English
Published: 2023
Subjects:
Online Access:https://doi.org/10.5194/tc-17-539-2023
https://tc.copernicus.org/articles/17/539/2023/
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spelling ftcopernicus:oai:publications.copernicus.org:tc105130 2023-05-15T16:38:33+02:00 Detection of ice core particles via deep neural networks Maffezzoli, Niccolò Cook, Eliza Bilt, Willem G. M. Støren, Eivind N. Festi, Daniela Muthreich, Florian Seddon, Alistair W. R. Burgay, François Baccolo, Giovanni Mygind, Amalie R. F. Petersen, Troels Spolaor, Andrea Vascon, Sebastiano Pelillo, Marcello Ferretti, Patrizia Reis, Rafael S. Simões, Jefferson C. Ronen, Yuval Delmonte, Barbara Viccaro, Marco Steffensen, Jørgen Peder Dahl-Jensen, Dorthe Nisancioglu, Kerim H. Barbante, Carlo 2023-02-07 application/pdf https://doi.org/10.5194/tc-17-539-2023 https://tc.copernicus.org/articles/17/539/2023/ eng eng doi:10.5194/tc-17-539-2023 https://tc.copernicus.org/articles/17/539/2023/ eISSN: 1994-0424 Text 2023 ftcopernicus https://doi.org/10.5194/tc-17-539-2023 2023-02-13T17:22:57Z Insoluble particles in ice cores record signatures of past climate parameters like vegetation dynamics, volcanic activity, and aridity. For some of them, the analytical detection relies on intensive bench microscopy investigation and requires dedicated sample preparation steps. Both are laborious, require in-depth knowledge, and often restrict sampling strategies. To help overcome these limitations, we present a framework based on flow imaging microscopy coupled to a deep neural network for autonomous image classification of ice core particles. We train the network to classify seven commonly found classes, namely mineral dust, felsic and mafic (basaltic) volcanic ash grains (tephra), three species of pollen ( Corylus avellana , Quercus robur , Quercus suber ), and contamination particles that may be introduced onto the ice core surface during core handling operations. The trained network achieves 96.8 % classification accuracy at test time. We present the system's potential and its limitations with respect to the detection of mineral dust, pollen grains, and tephra shards, using both controlled materials and real ice core samples. The methodology requires little sample material, is non-destructive, fully reproducible, and does not require any sample preparation procedures. The presented framework can bolster research in the field by cutting down processing time, supporting human-operated microscopy, and further unlocking the paleoclimate potential of ice core records by providing the opportunity to identify an array of ice core particles. Suggestions for an improved system to be deployed within a continuous flow analysis workflow are also presented. Text ice core Copernicus Publications: E-Journals The Cryosphere 17 2 539 565
institution Open Polar
collection Copernicus Publications: E-Journals
op_collection_id ftcopernicus
language English
description Insoluble particles in ice cores record signatures of past climate parameters like vegetation dynamics, volcanic activity, and aridity. For some of them, the analytical detection relies on intensive bench microscopy investigation and requires dedicated sample preparation steps. Both are laborious, require in-depth knowledge, and often restrict sampling strategies. To help overcome these limitations, we present a framework based on flow imaging microscopy coupled to a deep neural network for autonomous image classification of ice core particles. We train the network to classify seven commonly found classes, namely mineral dust, felsic and mafic (basaltic) volcanic ash grains (tephra), three species of pollen ( Corylus avellana , Quercus robur , Quercus suber ), and contamination particles that may be introduced onto the ice core surface during core handling operations. The trained network achieves 96.8 % classification accuracy at test time. We present the system's potential and its limitations with respect to the detection of mineral dust, pollen grains, and tephra shards, using both controlled materials and real ice core samples. The methodology requires little sample material, is non-destructive, fully reproducible, and does not require any sample preparation procedures. The presented framework can bolster research in the field by cutting down processing time, supporting human-operated microscopy, and further unlocking the paleoclimate potential of ice core records by providing the opportunity to identify an array of ice core particles. Suggestions for an improved system to be deployed within a continuous flow analysis workflow are also presented.
format Text
author Maffezzoli, Niccolò
Cook, Eliza
Bilt, Willem G. M.
Støren, Eivind N.
Festi, Daniela
Muthreich, Florian
Seddon, Alistair W. R.
Burgay, François
Baccolo, Giovanni
Mygind, Amalie R. F.
Petersen, Troels
Spolaor, Andrea
Vascon, Sebastiano
Pelillo, Marcello
Ferretti, Patrizia
Reis, Rafael S.
Simões, Jefferson C.
Ronen, Yuval
Delmonte, Barbara
Viccaro, Marco
Steffensen, Jørgen Peder
Dahl-Jensen, Dorthe
Nisancioglu, Kerim H.
Barbante, Carlo
spellingShingle Maffezzoli, Niccolò
Cook, Eliza
Bilt, Willem G. M.
Støren, Eivind N.
Festi, Daniela
Muthreich, Florian
Seddon, Alistair W. R.
Burgay, François
Baccolo, Giovanni
Mygind, Amalie R. F.
Petersen, Troels
Spolaor, Andrea
Vascon, Sebastiano
Pelillo, Marcello
Ferretti, Patrizia
Reis, Rafael S.
Simões, Jefferson C.
Ronen, Yuval
Delmonte, Barbara
Viccaro, Marco
Steffensen, Jørgen Peder
Dahl-Jensen, Dorthe
Nisancioglu, Kerim H.
Barbante, Carlo
Detection of ice core particles via deep neural networks
author_facet Maffezzoli, Niccolò
Cook, Eliza
Bilt, Willem G. M.
Støren, Eivind N.
Festi, Daniela
Muthreich, Florian
Seddon, Alistair W. R.
Burgay, François
Baccolo, Giovanni
Mygind, Amalie R. F.
Petersen, Troels
Spolaor, Andrea
Vascon, Sebastiano
Pelillo, Marcello
Ferretti, Patrizia
Reis, Rafael S.
Simões, Jefferson C.
Ronen, Yuval
Delmonte, Barbara
Viccaro, Marco
Steffensen, Jørgen Peder
Dahl-Jensen, Dorthe
Nisancioglu, Kerim H.
Barbante, Carlo
author_sort Maffezzoli, Niccolò
title Detection of ice core particles via deep neural networks
title_short Detection of ice core particles via deep neural networks
title_full Detection of ice core particles via deep neural networks
title_fullStr Detection of ice core particles via deep neural networks
title_full_unstemmed Detection of ice core particles via deep neural networks
title_sort detection of ice core particles via deep neural networks
publishDate 2023
url https://doi.org/10.5194/tc-17-539-2023
https://tc.copernicus.org/articles/17/539/2023/
genre ice core
genre_facet ice core
op_source eISSN: 1994-0424
op_relation doi:10.5194/tc-17-539-2023
https://tc.copernicus.org/articles/17/539/2023/
op_doi https://doi.org/10.5194/tc-17-539-2023
container_title The Cryosphere
container_volume 17
container_issue 2
container_start_page 539
op_container_end_page 565
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