Bottom RedOx Model (BROM v.1.1): a coupled benthic–pelagic model for simulation of water and sediment biogeochemistry

Interactions between seawater and benthic systems play an important role in global biogeochemical cycling. Benthic fluxes of some chemical elements (e.g., C, N, P, O, Si, Fe, Mn, S) alter the redox state and marine carbonate system (i.e., pH and carbonate saturation state), which in turn modulate th...

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Published in:Geoscientific Model Development
Main Authors: Yakushev, Evgeniy V., Protsenko, Elizaveta A., Bruggeman, Jorn, Wallhead, Philip, Pakhomova, Svetlana V., Yakubov, Shamil Kh., Bellerby, Richard G. J., Couture, Raoul-Marie
Format: Text
Language:English
Published: 2018
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Online Access:https://doi.org/10.5194/gmd-10-453-2017
https://gmd.copernicus.org/articles/10/453/2017/
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spelling ftcopernicus:oai:publications.copernicus.org:gmd48074 2023-05-15T17:51:25+02:00 Bottom RedOx Model (BROM v.1.1): a coupled benthic–pelagic model for simulation of water and sediment biogeochemistry Yakushev, Evgeniy V. Protsenko, Elizaveta A. Bruggeman, Jorn Wallhead, Philip Pakhomova, Svetlana V. Yakubov, Shamil Kh. Bellerby, Richard G. J. Couture, Raoul-Marie 2018-09-27 application/pdf https://doi.org/10.5194/gmd-10-453-2017 https://gmd.copernicus.org/articles/10/453/2017/ eng eng doi:10.5194/gmd-10-453-2017 https://gmd.copernicus.org/articles/10/453/2017/ eISSN: 1991-9603 Text 2018 ftcopernicus https://doi.org/10.5194/gmd-10-453-2017 2020-07-20T16:23:51Z Interactions between seawater and benthic systems play an important role in global biogeochemical cycling. Benthic fluxes of some chemical elements (e.g., C, N, P, O, Si, Fe, Mn, S) alter the redox state and marine carbonate system (i.e., pH and carbonate saturation state), which in turn modulate the functioning of benthic and pelagic ecosystems. The redox state of the near-bottom layer in many regions can change with time, responding to the supply of organic matter, physical regime, and coastal discharge. We developed a model (BROM) to represent key biogeochemical processes in the water and sediments and to simulate changes occurring in the bottom boundary layer. BROM consists of a transport module (BROM-transport) and several biogeochemical modules that are fully compatible with the Framework for the Aquatic Biogeochemical Models, allowing independent coupling to hydrophysical models in 1-D, 2-D, or 3-D. We demonstrate that BROM is capable of simulating the seasonality in production and mineralization of organic matter as well as the mixing that leads to variations in redox conditions. BROM can be used for analyzing and interpreting data on sediment–water exchange, and for simulating the consequences of forcings such as climate change, external nutrient loading, ocean acidification, carbon storage leakage, and point-source metal pollution. Text Ocean acidification Copernicus Publications: E-Journals Geoscientific Model Development 10 1 453 482
institution Open Polar
collection Copernicus Publications: E-Journals
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language English
description Interactions between seawater and benthic systems play an important role in global biogeochemical cycling. Benthic fluxes of some chemical elements (e.g., C, N, P, O, Si, Fe, Mn, S) alter the redox state and marine carbonate system (i.e., pH and carbonate saturation state), which in turn modulate the functioning of benthic and pelagic ecosystems. The redox state of the near-bottom layer in many regions can change with time, responding to the supply of organic matter, physical regime, and coastal discharge. We developed a model (BROM) to represent key biogeochemical processes in the water and sediments and to simulate changes occurring in the bottom boundary layer. BROM consists of a transport module (BROM-transport) and several biogeochemical modules that are fully compatible with the Framework for the Aquatic Biogeochemical Models, allowing independent coupling to hydrophysical models in 1-D, 2-D, or 3-D. We demonstrate that BROM is capable of simulating the seasonality in production and mineralization of organic matter as well as the mixing that leads to variations in redox conditions. BROM can be used for analyzing and interpreting data on sediment–water exchange, and for simulating the consequences of forcings such as climate change, external nutrient loading, ocean acidification, carbon storage leakage, and point-source metal pollution.
format Text
author Yakushev, Evgeniy V.
Protsenko, Elizaveta A.
Bruggeman, Jorn
Wallhead, Philip
Pakhomova, Svetlana V.
Yakubov, Shamil Kh.
Bellerby, Richard G. J.
Couture, Raoul-Marie
spellingShingle Yakushev, Evgeniy V.
Protsenko, Elizaveta A.
Bruggeman, Jorn
Wallhead, Philip
Pakhomova, Svetlana V.
Yakubov, Shamil Kh.
Bellerby, Richard G. J.
Couture, Raoul-Marie
Bottom RedOx Model (BROM v.1.1): a coupled benthic–pelagic model for simulation of water and sediment biogeochemistry
author_facet Yakushev, Evgeniy V.
Protsenko, Elizaveta A.
Bruggeman, Jorn
Wallhead, Philip
Pakhomova, Svetlana V.
Yakubov, Shamil Kh.
Bellerby, Richard G. J.
Couture, Raoul-Marie
author_sort Yakushev, Evgeniy V.
title Bottom RedOx Model (BROM v.1.1): a coupled benthic–pelagic model for simulation of water and sediment biogeochemistry
title_short Bottom RedOx Model (BROM v.1.1): a coupled benthic–pelagic model for simulation of water and sediment biogeochemistry
title_full Bottom RedOx Model (BROM v.1.1): a coupled benthic–pelagic model for simulation of water and sediment biogeochemistry
title_fullStr Bottom RedOx Model (BROM v.1.1): a coupled benthic–pelagic model for simulation of water and sediment biogeochemistry
title_full_unstemmed Bottom RedOx Model (BROM v.1.1): a coupled benthic–pelagic model for simulation of water and sediment biogeochemistry
title_sort bottom redox model (brom v.1.1): a coupled benthic–pelagic model for simulation of water and sediment biogeochemistry
publishDate 2018
url https://doi.org/10.5194/gmd-10-453-2017
https://gmd.copernicus.org/articles/10/453/2017/
genre Ocean acidification
genre_facet Ocean acidification
op_source eISSN: 1991-9603
op_relation doi:10.5194/gmd-10-453-2017
https://gmd.copernicus.org/articles/10/453/2017/
op_doi https://doi.org/10.5194/gmd-10-453-2017
container_title Geoscientific Model Development
container_volume 10
container_issue 1
container_start_page 453
op_container_end_page 482
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