Genetic diversity in gooseberry (Ribes uva-crispa), as estimated with SSR markers
European gooseberry (Ribes uva-crispa L.) is a popular berry crop in many European countries, including Sweden, Denmark and Ukraine. There is no active gooseberry breeding programme in either Sweden or Denmark, but a successful programme is operating in Ukraine. In Sweden and Denmark, research on go...
Published in: | Scientia Horticulturae |
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Main Authors: | , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
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2022
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Online Access: | https://curis.ku.dk/portal/da/publications/genetic-diversity-in-gooseberry-ribes-uvacrispa-as-estimated-with-ssr-markers(7a9717f8-6c4b-4636-9de9-489f88cdd129).html https://doi.org/10.1016/j.scienta.2022.111438 https://curis.ku.dk/ws/files/320656399/1_s2.0_S0304423822005581_main.pdf |
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ftcopenhagenunip:oai:pure.atira.dk:publications/7a9717f8-6c4b-4636-9de9-489f88cdd129 2024-06-09T07:48:37+00:00 Genetic diversity in gooseberry (Ribes uva-crispa), as estimated with SSR markers Nordlander, Josefine Skytte af Sätra, Jonas Mattisson, Helena Udovychenko, Kateryna Lushpigan, Olga Lose, Lasse Naess, Hans Leino, Matti Hjalmarsson, Inger Garkava-Gustavsson, Larisa 2022 application/pdf https://curis.ku.dk/portal/da/publications/genetic-diversity-in-gooseberry-ribes-uvacrispa-as-estimated-with-ssr-markers(7a9717f8-6c4b-4636-9de9-489f88cdd129).html https://doi.org/10.1016/j.scienta.2022.111438 https://curis.ku.dk/ws/files/320656399/1_s2.0_S0304423822005581_main.pdf eng eng info:eu-repo/semantics/openAccess Nordlander , J , Skytte af Sätra , J , Mattisson , H , Udovychenko , K , Lushpigan , O , Lose , L , Naess , H , Leino , M , Hjalmarsson , I & Garkava-Gustavsson , L 2022 , ' Genetic diversity in gooseberry (Ribes uva-crispa), as estimated with SSR markers ' , Scientia Horticulturae , vol. 306 , 111438 . https://doi.org/10.1016/j.scienta.2022.111438 Gene bank Genetic diversity Gooseberry Heirloom cultivars Ribes article 2022 ftcopenhagenunip https://doi.org/10.1016/j.scienta.2022.111438 2024-05-16T11:29:25Z European gooseberry (Ribes uva-crispa L.) is a popular berry crop in many European countries, including Sweden, Denmark and Ukraine. There is no active gooseberry breeding programme in either Sweden or Denmark, but a successful programme is operating in Ukraine. In Sweden and Denmark, research on gooseberries is primarily focused on collection and phenotypic evaluation of genetic resources. As part of these activities, a large number of inventory finds have been collected but have not yet been characterised morphologically or molecularly. The goal of this study was thus to characterise gooseberry germplasm with 15 simple sequence repeat (SSR) markers. From 242 accessions analysed, 153 unique genotypes were identified. Cultivars that have been in widespread cultivation in Sweden, such as the Finnish cultivars ‘Hinnonmäen Keltainen’ and ‘Hinnonmäen Punainen’, had relatively large numbers of synonymous samples. While many inventory finds were identifiable as synonyms of known cultivars, several were found to constitute unique genotypes within the germplasm studied. The studied genotypes clustered relatively well in three posterior groups, consisting of cultivars originating before and after the American gooseberry mildew (Sphaerotheca mors-uvae) outbreak around 1900 and cultivars originating from the territory of the former Soviet Union. A fourth genetic cluster consisting mainly of inventory finds from central and northern Sweden was also identified. In addition, it was possible to verify recorded and stipulated parentages for some of the cultivars studied and to identify three likely parent-parent-child trios. Thus, inventories of local gooseberry germplasm and a subsequent genotyping proved successful in finding unique local genotypes, with potential local adaptation. The data obtained provide a foundation for future studies of gooseberry genetic resources, while also illustrating the importance of a well-curated and phenotypically characterised set of reference cultivars for future studies. Article in Journal/Newspaper Northern Sweden University of Copenhagen: Research Ribes ENVELOPE(-60.633,-60.633,-62.650,-62.650) Scientia Horticulturae 306 111438 |
institution |
Open Polar |
collection |
University of Copenhagen: Research |
op_collection_id |
ftcopenhagenunip |
language |
English |
topic |
Gene bank Genetic diversity Gooseberry Heirloom cultivars Ribes |
spellingShingle |
Gene bank Genetic diversity Gooseberry Heirloom cultivars Ribes Nordlander, Josefine Skytte af Sätra, Jonas Mattisson, Helena Udovychenko, Kateryna Lushpigan, Olga Lose, Lasse Naess, Hans Leino, Matti Hjalmarsson, Inger Garkava-Gustavsson, Larisa Genetic diversity in gooseberry (Ribes uva-crispa), as estimated with SSR markers |
topic_facet |
Gene bank Genetic diversity Gooseberry Heirloom cultivars Ribes |
description |
European gooseberry (Ribes uva-crispa L.) is a popular berry crop in many European countries, including Sweden, Denmark and Ukraine. There is no active gooseberry breeding programme in either Sweden or Denmark, but a successful programme is operating in Ukraine. In Sweden and Denmark, research on gooseberries is primarily focused on collection and phenotypic evaluation of genetic resources. As part of these activities, a large number of inventory finds have been collected but have not yet been characterised morphologically or molecularly. The goal of this study was thus to characterise gooseberry germplasm with 15 simple sequence repeat (SSR) markers. From 242 accessions analysed, 153 unique genotypes were identified. Cultivars that have been in widespread cultivation in Sweden, such as the Finnish cultivars ‘Hinnonmäen Keltainen’ and ‘Hinnonmäen Punainen’, had relatively large numbers of synonymous samples. While many inventory finds were identifiable as synonyms of known cultivars, several were found to constitute unique genotypes within the germplasm studied. The studied genotypes clustered relatively well in three posterior groups, consisting of cultivars originating before and after the American gooseberry mildew (Sphaerotheca mors-uvae) outbreak around 1900 and cultivars originating from the territory of the former Soviet Union. A fourth genetic cluster consisting mainly of inventory finds from central and northern Sweden was also identified. In addition, it was possible to verify recorded and stipulated parentages for some of the cultivars studied and to identify three likely parent-parent-child trios. Thus, inventories of local gooseberry germplasm and a subsequent genotyping proved successful in finding unique local genotypes, with potential local adaptation. The data obtained provide a foundation for future studies of gooseberry genetic resources, while also illustrating the importance of a well-curated and phenotypically characterised set of reference cultivars for future studies. |
format |
Article in Journal/Newspaper |
author |
Nordlander, Josefine Skytte af Sätra, Jonas Mattisson, Helena Udovychenko, Kateryna Lushpigan, Olga Lose, Lasse Naess, Hans Leino, Matti Hjalmarsson, Inger Garkava-Gustavsson, Larisa |
author_facet |
Nordlander, Josefine Skytte af Sätra, Jonas Mattisson, Helena Udovychenko, Kateryna Lushpigan, Olga Lose, Lasse Naess, Hans Leino, Matti Hjalmarsson, Inger Garkava-Gustavsson, Larisa |
author_sort |
Nordlander, Josefine |
title |
Genetic diversity in gooseberry (Ribes uva-crispa), as estimated with SSR markers |
title_short |
Genetic diversity in gooseberry (Ribes uva-crispa), as estimated with SSR markers |
title_full |
Genetic diversity in gooseberry (Ribes uva-crispa), as estimated with SSR markers |
title_fullStr |
Genetic diversity in gooseberry (Ribes uva-crispa), as estimated with SSR markers |
title_full_unstemmed |
Genetic diversity in gooseberry (Ribes uva-crispa), as estimated with SSR markers |
title_sort |
genetic diversity in gooseberry (ribes uva-crispa), as estimated with ssr markers |
publishDate |
2022 |
url |
https://curis.ku.dk/portal/da/publications/genetic-diversity-in-gooseberry-ribes-uvacrispa-as-estimated-with-ssr-markers(7a9717f8-6c4b-4636-9de9-489f88cdd129).html https://doi.org/10.1016/j.scienta.2022.111438 https://curis.ku.dk/ws/files/320656399/1_s2.0_S0304423822005581_main.pdf |
long_lat |
ENVELOPE(-60.633,-60.633,-62.650,-62.650) |
geographic |
Ribes |
geographic_facet |
Ribes |
genre |
Northern Sweden |
genre_facet |
Northern Sweden |
op_source |
Nordlander , J , Skytte af Sätra , J , Mattisson , H , Udovychenko , K , Lushpigan , O , Lose , L , Naess , H , Leino , M , Hjalmarsson , I & Garkava-Gustavsson , L 2022 , ' Genetic diversity in gooseberry (Ribes uva-crispa), as estimated with SSR markers ' , Scientia Horticulturae , vol. 306 , 111438 . https://doi.org/10.1016/j.scienta.2022.111438 |
op_rights |
info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1016/j.scienta.2022.111438 |
container_title |
Scientia Horticulturae |
container_volume |
306 |
container_start_page |
111438 |
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1801380406025519104 |