id ftcopenhagenunip:oai:pure.atira.dk:publications/444e8406-6daf-4cce-92c6-1f563d745974
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spelling ftcopenhagenunip:oai:pure.atira.dk:publications/444e8406-6daf-4cce-92c6-1f563d745974 2024-06-09T07:40:41+00:00 Detection of ice core particles via deep neural networks Maffezzoli, Niccolo Cook, Eliza van der Bilt, Willem G. M. Storen, Eivind N. Festi, Daniela Muthreich, Florian Seddon, Alistair W. R. Burgay, Francois Baccolo, Giovanni Mygind, Amalie R. F. Petersen, Troels Spolaor, Andrea Vascon, Sebastiano Pelillo, Marcello Ferretti, Patrizia dos Reis, Rafael S. Simoes, Jefferson C. Ronen, Yuval Delmonte, Barbara Viccaro, Marco Steffensen, Jorgen Peder Dahl-Jensen, Dorthe Nisancioglu, Kerim H. Barbante, Carlo 2023-02-07 application/pdf https://curis.ku.dk/portal/da/publications/detection-of-ice-core-particles-via-deep-neural-networks(444e8406-6daf-4cce-92c6-1f563d745974).html https://doi.org/10.5194/tc-17-539-2023 https://curis.ku.dk/ws/files/337796558/tc_17_539_2023.pdf eng eng info:eu-repo/semantics/openAccess Maffezzoli , N , Cook , E , van der Bilt , W G M , Storen , E N , Festi , D , Muthreich , F , Seddon , A W R , Burgay , F , Baccolo , G , Mygind , A R F , Petersen , T , Spolaor , A , Vascon , S , Pelillo , M , Ferretti , P , dos Reis , R S , Simoes , J C , Ronen , Y , Delmonte , B , Viccaro , M , Steffensen , J P , Dahl-Jensen , D , Nisancioglu , K H & Barbante , C 2023 , ' Detection of ice core particles via deep neural networks ' , Cryosphere , vol. 17 , no. 2 , pp. 539-565 . https://doi.org/10.5194/tc-17-539-2023 MINERAL DUST DOME GREENLAND FLOWCAM GLACIER SIZE VARIABILITY ANTARCTICA MARKER RECORD article 2023 ftcopenhagenunip https://doi.org/10.5194/tc-17-539-2023 2024-05-16T11:29:28Z Insoluble particles in ice cores record signatures of past climate parameters like vegetation dynamics, volcanic activity, and aridity. For some of them, the analytical detection relies on intensive bench microscopy investigation and requires dedicated sample preparation steps. Both are laborious, require in-depth knowledge, and often restrict sampling strategies. To help overcome these limitations, we present a framework based on flow imaging microscopy coupled to a deep neural network for autonomous image classification of ice core particles. We train the network to classify seven commonly found classes, namely mineral dust, felsic and mafic (basaltic) volcanic ash grains (tephra), three species of pollen (Corylus avellana, Quercus robur, Quercus suber), and contamination particles that may be introduced onto the ice core surface during core handling operations. The trained network achieves 96.8 % classification accuracy at test time. We present the system's potential and its limitations with respect to the detection of mineral dust, pollen grains, and tephra shards, using both controlled materials and real ice core samples. The methodology requires little sample material, is non-destructive, fully reproducible, and does not require any sample preparation procedures. The presented framework can bolster research in the field by cutting down processing time, supporting human-operated microscopy, and further unlocking the paleoclimate potential of ice core records by providing the opportunity to identify an array of ice core particles. Suggestions for an improved system to be deployed within a continuous flow analysis workflow are also presented. Article in Journal/Newspaper Antarc* Antarctica glacier Greenland ice core University of Copenhagen: Research Greenland The Cryosphere 17 2 539 565
institution Open Polar
collection University of Copenhagen: Research
op_collection_id ftcopenhagenunip
language English
topic MINERAL DUST
DOME
GREENLAND
FLOWCAM
GLACIER
SIZE
VARIABILITY
ANTARCTICA
MARKER
RECORD
spellingShingle MINERAL DUST
DOME
GREENLAND
FLOWCAM
GLACIER
SIZE
VARIABILITY
ANTARCTICA
MARKER
RECORD
Maffezzoli, Niccolo
Cook, Eliza
van der Bilt, Willem G. M.
Storen, Eivind N.
Festi, Daniela
Muthreich, Florian
Seddon, Alistair W. R.
Burgay, Francois
Baccolo, Giovanni
Mygind, Amalie R. F.
Petersen, Troels
Spolaor, Andrea
Vascon, Sebastiano
Pelillo, Marcello
Ferretti, Patrizia
dos Reis, Rafael S.
Simoes, Jefferson C.
Ronen, Yuval
Delmonte, Barbara
Viccaro, Marco
Steffensen, Jorgen Peder
Dahl-Jensen, Dorthe
Nisancioglu, Kerim H.
Barbante, Carlo
Detection of ice core particles via deep neural networks
topic_facet MINERAL DUST
DOME
GREENLAND
FLOWCAM
GLACIER
SIZE
VARIABILITY
ANTARCTICA
MARKER
RECORD
description Insoluble particles in ice cores record signatures of past climate parameters like vegetation dynamics, volcanic activity, and aridity. For some of them, the analytical detection relies on intensive bench microscopy investigation and requires dedicated sample preparation steps. Both are laborious, require in-depth knowledge, and often restrict sampling strategies. To help overcome these limitations, we present a framework based on flow imaging microscopy coupled to a deep neural network for autonomous image classification of ice core particles. We train the network to classify seven commonly found classes, namely mineral dust, felsic and mafic (basaltic) volcanic ash grains (tephra), three species of pollen (Corylus avellana, Quercus robur, Quercus suber), and contamination particles that may be introduced onto the ice core surface during core handling operations. The trained network achieves 96.8 % classification accuracy at test time. We present the system's potential and its limitations with respect to the detection of mineral dust, pollen grains, and tephra shards, using both controlled materials and real ice core samples. The methodology requires little sample material, is non-destructive, fully reproducible, and does not require any sample preparation procedures. The presented framework can bolster research in the field by cutting down processing time, supporting human-operated microscopy, and further unlocking the paleoclimate potential of ice core records by providing the opportunity to identify an array of ice core particles. Suggestions for an improved system to be deployed within a continuous flow analysis workflow are also presented.
format Article in Journal/Newspaper
author Maffezzoli, Niccolo
Cook, Eliza
van der Bilt, Willem G. M.
Storen, Eivind N.
Festi, Daniela
Muthreich, Florian
Seddon, Alistair W. R.
Burgay, Francois
Baccolo, Giovanni
Mygind, Amalie R. F.
Petersen, Troels
Spolaor, Andrea
Vascon, Sebastiano
Pelillo, Marcello
Ferretti, Patrizia
dos Reis, Rafael S.
Simoes, Jefferson C.
Ronen, Yuval
Delmonte, Barbara
Viccaro, Marco
Steffensen, Jorgen Peder
Dahl-Jensen, Dorthe
Nisancioglu, Kerim H.
Barbante, Carlo
author_facet Maffezzoli, Niccolo
Cook, Eliza
van der Bilt, Willem G. M.
Storen, Eivind N.
Festi, Daniela
Muthreich, Florian
Seddon, Alistair W. R.
Burgay, Francois
Baccolo, Giovanni
Mygind, Amalie R. F.
Petersen, Troels
Spolaor, Andrea
Vascon, Sebastiano
Pelillo, Marcello
Ferretti, Patrizia
dos Reis, Rafael S.
Simoes, Jefferson C.
Ronen, Yuval
Delmonte, Barbara
Viccaro, Marco
Steffensen, Jorgen Peder
Dahl-Jensen, Dorthe
Nisancioglu, Kerim H.
Barbante, Carlo
author_sort Maffezzoli, Niccolo
title Detection of ice core particles via deep neural networks
title_short Detection of ice core particles via deep neural networks
title_full Detection of ice core particles via deep neural networks
title_fullStr Detection of ice core particles via deep neural networks
title_full_unstemmed Detection of ice core particles via deep neural networks
title_sort detection of ice core particles via deep neural networks
publishDate 2023
url https://curis.ku.dk/portal/da/publications/detection-of-ice-core-particles-via-deep-neural-networks(444e8406-6daf-4cce-92c6-1f563d745974).html
https://doi.org/10.5194/tc-17-539-2023
https://curis.ku.dk/ws/files/337796558/tc_17_539_2023.pdf
geographic Greenland
geographic_facet Greenland
genre Antarc*
Antarctica
glacier
Greenland
ice core
genre_facet Antarc*
Antarctica
glacier
Greenland
ice core
op_source Maffezzoli , N , Cook , E , van der Bilt , W G M , Storen , E N , Festi , D , Muthreich , F , Seddon , A W R , Burgay , F , Baccolo , G , Mygind , A R F , Petersen , T , Spolaor , A , Vascon , S , Pelillo , M , Ferretti , P , dos Reis , R S , Simoes , J C , Ronen , Y , Delmonte , B , Viccaro , M , Steffensen , J P , Dahl-Jensen , D , Nisancioglu , K H & Barbante , C 2023 , ' Detection of ice core particles via deep neural networks ' , Cryosphere , vol. 17 , no. 2 , pp. 539-565 . https://doi.org/10.5194/tc-17-539-2023
op_rights info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.5194/tc-17-539-2023
container_title The Cryosphere
container_volume 17
container_issue 2
container_start_page 539
op_container_end_page 565
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