Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries
Background: The impressive adaptive radiation of notothenioid fishes in Antarctic waters is generally thought to have been facilitated by an evolutionary key innovation, antifreeze glycoproteins, permitting the rapid evolution of more than 120 species subsequent to the Antarctic glaciation. By way o...
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ftconicet:oai:ri.conicet.gov.ar:11336/116193 2023-10-09T21:47:16+02:00 Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries Ceballos, Santiago Guillermo Roesti, Marius Matschiner, Michael Fernandez, Daniel Alfredo Damerau, Malte Hanel, Reinhold Salzburger, Walter application/pdf http://hdl.handle.net/11336/116193 eng eng BioMed Central info:eu-repo/semantics/altIdentifier/doi/10.1186/s12862-019-1345-z info:eu-repo/semantics/altIdentifier/url/https://bmcevolbiol.biomedcentral.com/articles/10.1186/s12862-019-1345-z http://hdl.handle.net/11336/116193 Ceballos, Santiago Guillermo; Roesti, Marius; Matschiner, Michael; Fernandez, Daniel Alfredo; Damerau, Malte; et al.; Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries; BioMed Central; BMC Evolutionary Biology; 19; 1; 1-2019; 1-14 1471-2148 CONICET Digital CONICET info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/2.5/ar/ ADAPTIVE RADIATION CRYPTIC SPECIES PATAGONOTOTHEN RAD https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 info:eu-repo/semantics/article info:ar-repo/semantics/artículo info:eu-repo/semantics/publishedVersion ftconicet https://doi.org/10.1186/s12862-019-1345-z 2023-09-24T19:54:31Z Background: The impressive adaptive radiation of notothenioid fishes in Antarctic waters is generally thought to have been facilitated by an evolutionary key innovation, antifreeze glycoproteins, permitting the rapid evolution of more than 120 species subsequent to the Antarctic glaciation. By way of contrast, the second-most species-rich notothenioid genus, Patagonotothen, which is nested within the Antarctic clade of Notothenioidei, is almost exclusively found in the non-Antarctic waters of Patagonia. While the drivers of the diversification of Patagonotothen are currently unknown, they are unlikely to be related to antifreeze glycoproteins, given that water temperatures in Patagonia are well above freezing point. Here we performed a phylogenetic analysis based on genome-wide single nucleotide polymorphisms (SNPs) derived from restriction site-associated DNA sequencing (RADseq) in a total of twelve Patagonotothen species. Results: We present a well-supported, time-calibrated phylogenetic hypothesis including closely and distantly related outgroups, confirming the monophyly of the genus Patagonotothen with an origin approximately 3 million years ago and the paraphyly of both the sister genus Lepidonotothen and the family Notothenidae. Our phylogenomic and population genetic analyses highlight a previously unrecognized linage and provide evidence for shared genetic variation between some closely related species. We also provide a mitochondrial phylogeny showing mitonuclear discordance. Conclusions: Based on a combination of phylogenomic and population genomic approaches, we provide evidence for the existence of a new, potentially cryptic, Patagonotothen species, and demonstrate that genetic boundaries between some closely related species are diffuse, likely due to recent introgression and/or incomplete linage sorting. The detected mitonuclear discordance highlights the limitations of relying on a single locus for species barcoding. In addition, our time-calibrated phylogenetic hypothesis shows that the early ... Article in Journal/Newspaper Antarc* Antarctic CONICET Digital (Consejo Nacional de Investigaciones Científicas y Técnicas) Antarctic The Antarctic Patagonia BMC Evolutionary Biology 19 1 |
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CONICET Digital (Consejo Nacional de Investigaciones Científicas y Técnicas) |
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English |
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ADAPTIVE RADIATION CRYPTIC SPECIES PATAGONOTOTHEN RAD https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
spellingShingle |
ADAPTIVE RADIATION CRYPTIC SPECIES PATAGONOTOTHEN RAD https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 Ceballos, Santiago Guillermo Roesti, Marius Matschiner, Michael Fernandez, Daniel Alfredo Damerau, Malte Hanel, Reinhold Salzburger, Walter Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
topic_facet |
ADAPTIVE RADIATION CRYPTIC SPECIES PATAGONOTOTHEN RAD https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
description |
Background: The impressive adaptive radiation of notothenioid fishes in Antarctic waters is generally thought to have been facilitated by an evolutionary key innovation, antifreeze glycoproteins, permitting the rapid evolution of more than 120 species subsequent to the Antarctic glaciation. By way of contrast, the second-most species-rich notothenioid genus, Patagonotothen, which is nested within the Antarctic clade of Notothenioidei, is almost exclusively found in the non-Antarctic waters of Patagonia. While the drivers of the diversification of Patagonotothen are currently unknown, they are unlikely to be related to antifreeze glycoproteins, given that water temperatures in Patagonia are well above freezing point. Here we performed a phylogenetic analysis based on genome-wide single nucleotide polymorphisms (SNPs) derived from restriction site-associated DNA sequencing (RADseq) in a total of twelve Patagonotothen species. Results: We present a well-supported, time-calibrated phylogenetic hypothesis including closely and distantly related outgroups, confirming the monophyly of the genus Patagonotothen with an origin approximately 3 million years ago and the paraphyly of both the sister genus Lepidonotothen and the family Notothenidae. Our phylogenomic and population genetic analyses highlight a previously unrecognized linage and provide evidence for shared genetic variation between some closely related species. We also provide a mitochondrial phylogeny showing mitonuclear discordance. Conclusions: Based on a combination of phylogenomic and population genomic approaches, we provide evidence for the existence of a new, potentially cryptic, Patagonotothen species, and demonstrate that genetic boundaries between some closely related species are diffuse, likely due to recent introgression and/or incomplete linage sorting. The detected mitonuclear discordance highlights the limitations of relying on a single locus for species barcoding. In addition, our time-calibrated phylogenetic hypothesis shows that the early ... |
format |
Article in Journal/Newspaper |
author |
Ceballos, Santiago Guillermo Roesti, Marius Matschiner, Michael Fernandez, Daniel Alfredo Damerau, Malte Hanel, Reinhold Salzburger, Walter |
author_facet |
Ceballos, Santiago Guillermo Roesti, Marius Matschiner, Michael Fernandez, Daniel Alfredo Damerau, Malte Hanel, Reinhold Salzburger, Walter |
author_sort |
Ceballos, Santiago Guillermo |
title |
Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
title_short |
Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
title_full |
Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
title_fullStr |
Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
title_full_unstemmed |
Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
title_sort |
phylogenomics of an extra-antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
publisher |
BioMed Central |
url |
http://hdl.handle.net/11336/116193 |
geographic |
Antarctic The Antarctic Patagonia |
geographic_facet |
Antarctic The Antarctic Patagonia |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1186/s12862-019-1345-z info:eu-repo/semantics/altIdentifier/url/https://bmcevolbiol.biomedcentral.com/articles/10.1186/s12862-019-1345-z http://hdl.handle.net/11336/116193 Ceballos, Santiago Guillermo; Roesti, Marius; Matschiner, Michael; Fernandez, Daniel Alfredo; Damerau, Malte; et al.; Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries; BioMed Central; BMC Evolutionary Biology; 19; 1; 1-2019; 1-14 1471-2148 CONICET Digital CONICET |
op_rights |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/2.5/ar/ |
op_doi |
https://doi.org/10.1186/s12862-019-1345-z |
container_title |
BMC Evolutionary Biology |
container_volume |
19 |
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1 |
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1779310265249038336 |