The plastid genome of Deschampsia cespitosa (Poaceae)
Plastid genome analysis of non-model organisms provides valuable information for basic research e.g., molecular evolutionary genomics, phylogeny and phylogeography. Deschampsia cespitosa is the most widespread species of the genus and it is a common grass that is found across Eurasia and North Ameri...
Published in: | Molecules |
---|---|
Main Authors: | , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
Molecular Diversity Preservation International
|
Subjects: | |
Online Access: | http://hdl.handle.net/11336/109288 |
id |
ftconicet:oai:ri.conicet.gov.ar:11336/109288 |
---|---|
record_format |
openpolar |
spelling |
ftconicet:oai:ri.conicet.gov.ar:11336/109288 2023-10-09T21:47:13+02:00 The plastid genome of Deschampsia cespitosa (Poaceae) Chiapella, Jorge Oscar Barfuss, Michael Xue, Zhi-Qing Greimler, Josef application/pdf http://hdl.handle.net/11336/109288 eng eng Molecular Diversity Preservation International info:eu-repo/semantics/altIdentifier/url/https://www.mdpi.com/1420-3049/24/2/216 info:eu-repo/semantics/altIdentifier/doi/10.3390/molecules24020216 http://hdl.handle.net/11336/109288 Chiapella, Jorge Oscar; Barfuss, Michael; Xue, Zhi-Qing; Greimler, Josef; The plastid genome of Deschampsia cespitosa (Poaceae); Molecular Diversity Preservation International; Molecules; 24; 2; 1-2019 1420-3049 CONICET Digital CONICET info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ DESCHAMPSIA CESPITOSA DESCHAMPSIA ANTARCTICA CHLOROPLAST GENOME COMPARISON HIGH-THROUGHPUT SEQUENCING https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 info:eu-repo/semantics/article info:ar-repo/semantics/artículo info:eu-repo/semantics/publishedVersion ftconicet https://doi.org/10.3390/molecules24020216 2023-09-24T19:06:55Z Plastid genome analysis of non-model organisms provides valuable information for basic research e.g., molecular evolutionary genomics, phylogeny and phylogeography. Deschampsia cespitosa is the most widespread species of the genus and it is a common grass that is found across Eurasia and North America. Scattered populations in regions of appropriate ecological conditions are also found in Australia, New Zealand and southern South America, where it is sympatric with D. antarctica. We analyzed the plastid genome of a sample of Deschampsia cespitosa of the Austrian Alps using high-throughput sequencing. The plastid (cp) genome shows the typical quadripartite structure with a length of 135,340 bp, comprising a large single-copy (LSC) region of 79,992 bp, a small single-copy (SSC) region of 12,572 bp and two inverted repeats (IR) regions of 21,388 bp each. It contains 115 genes,including 85 protein-coding genes, four ribosomal RNA genes and 30 transfer RNA genes. The GC content (%), number of repeats and microsatellites, RNA editing sites and codon usage were highly similar to those of D. antarctica. The results of this present study highlight the extremely conserved nature of the cp genome in this group, since the comparison involved individuals separated by about 13,000 km, from the Alps to Antarctica. Fil: Chiapella, Jorge Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; Argentina Fil: Barfuss, Michael. Universidad de Viena. Instituto de Botanica; Austria Fil: Xue, Zhi-Qing. Universidad de Viena. Instituto de Botanica; Austria Fil: Greimler, Josef. Universidad de Viena. Instituto de Botanica; Austria Article in Journal/Newspaper Antarc* Antarctica CONICET Digital (Consejo Nacional de Investigaciones Científicas y Técnicas) New Zealand Argentina Molecules 24 2 216 |
institution |
Open Polar |
collection |
CONICET Digital (Consejo Nacional de Investigaciones Científicas y Técnicas) |
op_collection_id |
ftconicet |
language |
English |
topic |
DESCHAMPSIA CESPITOSA DESCHAMPSIA ANTARCTICA CHLOROPLAST GENOME COMPARISON HIGH-THROUGHPUT SEQUENCING https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
spellingShingle |
DESCHAMPSIA CESPITOSA DESCHAMPSIA ANTARCTICA CHLOROPLAST GENOME COMPARISON HIGH-THROUGHPUT SEQUENCING https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 Chiapella, Jorge Oscar Barfuss, Michael Xue, Zhi-Qing Greimler, Josef The plastid genome of Deschampsia cespitosa (Poaceae) |
topic_facet |
DESCHAMPSIA CESPITOSA DESCHAMPSIA ANTARCTICA CHLOROPLAST GENOME COMPARISON HIGH-THROUGHPUT SEQUENCING https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
description |
Plastid genome analysis of non-model organisms provides valuable information for basic research e.g., molecular evolutionary genomics, phylogeny and phylogeography. Deschampsia cespitosa is the most widespread species of the genus and it is a common grass that is found across Eurasia and North America. Scattered populations in regions of appropriate ecological conditions are also found in Australia, New Zealand and southern South America, where it is sympatric with D. antarctica. We analyzed the plastid genome of a sample of Deschampsia cespitosa of the Austrian Alps using high-throughput sequencing. The plastid (cp) genome shows the typical quadripartite structure with a length of 135,340 bp, comprising a large single-copy (LSC) region of 79,992 bp, a small single-copy (SSC) region of 12,572 bp and two inverted repeats (IR) regions of 21,388 bp each. It contains 115 genes,including 85 protein-coding genes, four ribosomal RNA genes and 30 transfer RNA genes. The GC content (%), number of repeats and microsatellites, RNA editing sites and codon usage were highly similar to those of D. antarctica. The results of this present study highlight the extremely conserved nature of the cp genome in this group, since the comparison involved individuals separated by about 13,000 km, from the Alps to Antarctica. Fil: Chiapella, Jorge Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; Argentina Fil: Barfuss, Michael. Universidad de Viena. Instituto de Botanica; Austria Fil: Xue, Zhi-Qing. Universidad de Viena. Instituto de Botanica; Austria Fil: Greimler, Josef. Universidad de Viena. Instituto de Botanica; Austria |
format |
Article in Journal/Newspaper |
author |
Chiapella, Jorge Oscar Barfuss, Michael Xue, Zhi-Qing Greimler, Josef |
author_facet |
Chiapella, Jorge Oscar Barfuss, Michael Xue, Zhi-Qing Greimler, Josef |
author_sort |
Chiapella, Jorge Oscar |
title |
The plastid genome of Deschampsia cespitosa (Poaceae) |
title_short |
The plastid genome of Deschampsia cespitosa (Poaceae) |
title_full |
The plastid genome of Deschampsia cespitosa (Poaceae) |
title_fullStr |
The plastid genome of Deschampsia cespitosa (Poaceae) |
title_full_unstemmed |
The plastid genome of Deschampsia cespitosa (Poaceae) |
title_sort |
plastid genome of deschampsia cespitosa (poaceae) |
publisher |
Molecular Diversity Preservation International |
url |
http://hdl.handle.net/11336/109288 |
geographic |
New Zealand Argentina |
geographic_facet |
New Zealand Argentina |
genre |
Antarc* Antarctica |
genre_facet |
Antarc* Antarctica |
op_relation |
info:eu-repo/semantics/altIdentifier/url/https://www.mdpi.com/1420-3049/24/2/216 info:eu-repo/semantics/altIdentifier/doi/10.3390/molecules24020216 http://hdl.handle.net/11336/109288 Chiapella, Jorge Oscar; Barfuss, Michael; Xue, Zhi-Qing; Greimler, Josef; The plastid genome of Deschampsia cespitosa (Poaceae); Molecular Diversity Preservation International; Molecules; 24; 2; 1-2019 1420-3049 CONICET Digital CONICET |
op_rights |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
op_doi |
https://doi.org/10.3390/molecules24020216 |
container_title |
Molecules |
container_volume |
24 |
container_issue |
2 |
container_start_page |
216 |
_version_ |
1779310166022291456 |