Understanding the nature of bonding interactions in the carbonic acid dimers

Carbonic acid dimer, (CA)2, (H2CO3)2, helps to explain the existence of this acid as a stable species, different to a simple sum between carbon dioxide and water. Five distinct, well characterized types of intermolecular interactions contribute to the stabilization of the dimers, namely, C=O⋯H–O, H–...

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Published in:Journal of Molecular Modeling
Main Authors: Zapata Escobar, Andy Danian, Murillo López, Juliana Andrea, Hadad, C. Z., Restrepo Cossio, Albeiro Alonso
Format: Article in Journal/Newspaper
Language:English
Published: Springer
Subjects:
Online Access:http://hdl.handle.net/11336/105816
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spelling ftconicet:oai:ri.conicet.gov.ar:11336/105816 2023-10-09T21:50:40+02:00 Understanding the nature of bonding interactions in the carbonic acid dimers Zapata Escobar, Andy Danian Murillo López, Juliana Andrea Hadad, C. Z. Restrepo Cossio, Albeiro Alonso application/pdf http://hdl.handle.net/11336/105816 eng eng Springer info:eu-repo/semantics/altIdentifier/url/https://link.springer.com/article/10.1007/s00894-018-3907-1 info:eu-repo/semantics/altIdentifier/doi/10.1007/s00894-018-3907-1 http://hdl.handle.net/11336/105816 Zapata Escobar, Andy Danian; Murillo López, Juliana Andrea; Hadad, C. Z.; Restrepo Cossio, Albeiro Alonso; Understanding the nature of bonding interactions in the carbonic acid dimers; Springer; Journal of Molecular Modeling; 25; 20; 1-2019; 1-10 1610-2940 0948-5023 CONICET Digital CONICET info:eu-repo/semantics/restrictedAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ BIFURCATED BONDS CARBONIC ACID HYDROGEN BONDS NBOS QTAIM https://purl.org/becyt/ford/1.4 https://purl.org/becyt/ford/1 info:eu-repo/semantics/article info:ar-repo/semantics/artículo info:eu-repo/semantics/publishedVersion ftconicet https://doi.org/10.1007/s00894-018-3907-1 2023-09-24T18:36:42Z Carbonic acid dimer, (CA)2, (H2CO3)2, helps to explain the existence of this acid as a stable species, different to a simple sum between carbon dioxide and water. Five distinct, well characterized types of intermolecular interactions contribute to the stabilization of the dimers, namely, C=O⋯H–O, H–O⋯H–O, C=O⋯C=O, C=O⋯O–H, and C–O⋯O–H. In many cases, the stabilizing hydrogen bonds are of at least the same strength as in the water dimer. We dissect the nature of intermolecular interactions and assess their influence on stability. For a set of 40 (H2CO3)2 isomers, C=O⋯H–O hydrogen bonds between the carbonyl oxygen in one CA molecule and the acidic hydrogen in the hydroxyl group at a second CA molecule are the major stabilizing factors because they exhibit the shortest interaction distances, the largest orbital interaction energies, and the largest accumulation of electron densities around the corresponding bond critical points. In most cases, these are closed-shell hydrogen bonds, however, in a few instances, some covalent character is induced. Bifurcated hydrogen bonds are a common occurrence in the dimers of carbonic acid, resulting in a complex picture with multiple orbital interactions of various strengths. Two anti–anti monomers interacting via the strongest C=O⋯H–O hydrogen bonds are the ingredients for the formation of the lowest energy dimers. Fil: Zapata Escobar, Andy Danian. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Modelado e Innovación Tecnológica. Universidad Nacional del Nordeste. Facultad de Ciencias Exactas Naturales y Agrimensura. Instituto de Modelado e Innovación Tecnológica; Argentina. Universidad de Antioquia; Colombia Fil: Murillo López, Juliana Andrea. Universidad Andrés Bello; Chile Fil: Hadad, C. Z. Universidad de Antioquia; Colombia Fil: Restrepo Cossio, Albeiro Alonso. Universidad de Antioquia; Colombia Article in Journal/Newspaper Carbonic acid CONICET Digital (Consejo Nacional de Investigaciones Científicas y Técnicas) Argentina Nordeste ENVELOPE(-66.867,-66.867,-68.167,-68.167) Bello ENVELOPE(-56.933,-56.933,-64.333,-64.333) Escobar ENVELOPE(-45.150,-45.150,-60.683,-60.683) Cossio ENVELOPE(-58.450,-58.450,-62.217,-62.217) Journal of Molecular Modeling 25 1
institution Open Polar
collection CONICET Digital (Consejo Nacional de Investigaciones Científicas y Técnicas)
op_collection_id ftconicet
language English
topic BIFURCATED BONDS
CARBONIC ACID
HYDROGEN BONDS
NBOS
QTAIM
https://purl.org/becyt/ford/1.4
https://purl.org/becyt/ford/1
spellingShingle BIFURCATED BONDS
CARBONIC ACID
HYDROGEN BONDS
NBOS
QTAIM
https://purl.org/becyt/ford/1.4
https://purl.org/becyt/ford/1
Zapata Escobar, Andy Danian
Murillo López, Juliana Andrea
Hadad, C. Z.
Restrepo Cossio, Albeiro Alonso
Understanding the nature of bonding interactions in the carbonic acid dimers
topic_facet BIFURCATED BONDS
CARBONIC ACID
HYDROGEN BONDS
NBOS
QTAIM
https://purl.org/becyt/ford/1.4
https://purl.org/becyt/ford/1
description Carbonic acid dimer, (CA)2, (H2CO3)2, helps to explain the existence of this acid as a stable species, different to a simple sum between carbon dioxide and water. Five distinct, well characterized types of intermolecular interactions contribute to the stabilization of the dimers, namely, C=O⋯H–O, H–O⋯H–O, C=O⋯C=O, C=O⋯O–H, and C–O⋯O–H. In many cases, the stabilizing hydrogen bonds are of at least the same strength as in the water dimer. We dissect the nature of intermolecular interactions and assess their influence on stability. For a set of 40 (H2CO3)2 isomers, C=O⋯H–O hydrogen bonds between the carbonyl oxygen in one CA molecule and the acidic hydrogen in the hydroxyl group at a second CA molecule are the major stabilizing factors because they exhibit the shortest interaction distances, the largest orbital interaction energies, and the largest accumulation of electron densities around the corresponding bond critical points. In most cases, these are closed-shell hydrogen bonds, however, in a few instances, some covalent character is induced. Bifurcated hydrogen bonds are a common occurrence in the dimers of carbonic acid, resulting in a complex picture with multiple orbital interactions of various strengths. Two anti–anti monomers interacting via the strongest C=O⋯H–O hydrogen bonds are the ingredients for the formation of the lowest energy dimers. Fil: Zapata Escobar, Andy Danian. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Modelado e Innovación Tecnológica. Universidad Nacional del Nordeste. Facultad de Ciencias Exactas Naturales y Agrimensura. Instituto de Modelado e Innovación Tecnológica; Argentina. Universidad de Antioquia; Colombia Fil: Murillo López, Juliana Andrea. Universidad Andrés Bello; Chile Fil: Hadad, C. Z. Universidad de Antioquia; Colombia Fil: Restrepo Cossio, Albeiro Alonso. Universidad de Antioquia; Colombia
format Article in Journal/Newspaper
author Zapata Escobar, Andy Danian
Murillo López, Juliana Andrea
Hadad, C. Z.
Restrepo Cossio, Albeiro Alonso
author_facet Zapata Escobar, Andy Danian
Murillo López, Juliana Andrea
Hadad, C. Z.
Restrepo Cossio, Albeiro Alonso
author_sort Zapata Escobar, Andy Danian
title Understanding the nature of bonding interactions in the carbonic acid dimers
title_short Understanding the nature of bonding interactions in the carbonic acid dimers
title_full Understanding the nature of bonding interactions in the carbonic acid dimers
title_fullStr Understanding the nature of bonding interactions in the carbonic acid dimers
title_full_unstemmed Understanding the nature of bonding interactions in the carbonic acid dimers
title_sort understanding the nature of bonding interactions in the carbonic acid dimers
publisher Springer
url http://hdl.handle.net/11336/105816
long_lat ENVELOPE(-66.867,-66.867,-68.167,-68.167)
ENVELOPE(-56.933,-56.933,-64.333,-64.333)
ENVELOPE(-45.150,-45.150,-60.683,-60.683)
ENVELOPE(-58.450,-58.450,-62.217,-62.217)
geographic Argentina
Nordeste
Bello
Escobar
Cossio
geographic_facet Argentina
Nordeste
Bello
Escobar
Cossio
genre Carbonic acid
genre_facet Carbonic acid
op_relation info:eu-repo/semantics/altIdentifier/url/https://link.springer.com/article/10.1007/s00894-018-3907-1
info:eu-repo/semantics/altIdentifier/doi/10.1007/s00894-018-3907-1
http://hdl.handle.net/11336/105816
Zapata Escobar, Andy Danian; Murillo López, Juliana Andrea; Hadad, C. Z.; Restrepo Cossio, Albeiro Alonso; Understanding the nature of bonding interactions in the carbonic acid dimers; Springer; Journal of Molecular Modeling; 25; 20; 1-2019; 1-10
1610-2940
0948-5023
CONICET Digital
CONICET
op_rights info:eu-repo/semantics/restrictedAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
op_doi https://doi.org/10.1007/s00894-018-3907-1
container_title Journal of Molecular Modeling
container_volume 25
container_issue 1
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