Correspondence

A novel alkaliphilic and psychrophilic bacterium was isolated from the cold and alkaline ikaite tufa columns of the Ikka Fjord in south-west Greenland. According to 16S rRNA gene sequence analysis, strain GCM71T belonged to the family ‘Flexibacteraceae ’ in the phylum Bacteroidetes. Strain GCM71T, t...

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Main Authors: Mariane Schmidt, Peter Stougaard
Other Authors: The Pennsylvania State University CiteSeerX Archives
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Language:English
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Online Access:http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.559.4983
http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf
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spelling ftciteseerx:oai:CiteSeerX.psu:10.1.1.559.4983 2023-05-15T16:29:33+02:00 Correspondence Mariane Schmidt Peter Stougaard The Pennsylvania State University CiteSeerX Archives application/pdf http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.559.4983 http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf en eng http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.559.4983 http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf Metadata may be used without restrictions as long as the oai identifier remains attached to it. http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf text ftciteseerx 2016-01-08T11:56:09Z A novel alkaliphilic and psychrophilic bacterium was isolated from the cold and alkaline ikaite tufa columns of the Ikka Fjord in south-west Greenland. According to 16S rRNA gene sequence analysis, strain GCM71T belonged to the family ‘Flexibacteraceae ’ in the phylum Bacteroidetes. Strain GCM71T, together with five related isolates from ikaite columns, formed a separate cluster with 86–93 % gene sequence similarity to their closest relative, Belliella baltica. The G+C content of the DNA from strain GCM71T was 43?1 mol%, whereas that of B. baltica was reported to be 35 mol%. DNA–DNA hybridization between strain GCM71T and B. baltica was 9?5 %. The strain was red pigmented, Gram-negative, strictly aerobic with non-motile, rod-shaped cells. The optimal growth conditions for strain GCM71T were pH 9?2–10?0, 5 6C and 0?6 % NaCl. The fatty acid profile of the novel strain was dominated by branched and unsaturated fatty acids (90–97 %), with a high abundance of iso-C17: 1v9c (17?5 %), iso-C17: 0 3-OH (17?5 %) and summed feature 3, comprising iso-C15: 0 2-OH and/or C16: 1v7c (12?6 %). Phylogenetic, chemotaxonomic and physiological characteristics showed that the novel strain could not be affiliated to any known genus. A new genus, Rhodonellum gen. nov., is proposed to accommodate the novel strain. Strain GCM71T (=DSM 17998T=LMG 23454T) is proposed as the type strain of the type species, Rhodonellum psychrophilum sp. nov. Text Greenland Unknown Greenland Ikka ENVELOPE(-48.100,-48.100,61.150,61.150)
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op_collection_id ftciteseerx
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description A novel alkaliphilic and psychrophilic bacterium was isolated from the cold and alkaline ikaite tufa columns of the Ikka Fjord in south-west Greenland. According to 16S rRNA gene sequence analysis, strain GCM71T belonged to the family ‘Flexibacteraceae ’ in the phylum Bacteroidetes. Strain GCM71T, together with five related isolates from ikaite columns, formed a separate cluster with 86–93 % gene sequence similarity to their closest relative, Belliella baltica. The G+C content of the DNA from strain GCM71T was 43?1 mol%, whereas that of B. baltica was reported to be 35 mol%. DNA–DNA hybridization between strain GCM71T and B. baltica was 9?5 %. The strain was red pigmented, Gram-negative, strictly aerobic with non-motile, rod-shaped cells. The optimal growth conditions for strain GCM71T were pH 9?2–10?0, 5 6C and 0?6 % NaCl. The fatty acid profile of the novel strain was dominated by branched and unsaturated fatty acids (90–97 %), with a high abundance of iso-C17: 1v9c (17?5 %), iso-C17: 0 3-OH (17?5 %) and summed feature 3, comprising iso-C15: 0 2-OH and/or C16: 1v7c (12?6 %). Phylogenetic, chemotaxonomic and physiological characteristics showed that the novel strain could not be affiliated to any known genus. A new genus, Rhodonellum gen. nov., is proposed to accommodate the novel strain. Strain GCM71T (=DSM 17998T=LMG 23454T) is proposed as the type strain of the type species, Rhodonellum psychrophilum sp. nov.
author2 The Pennsylvania State University CiteSeerX Archives
format Text
author Mariane Schmidt
Peter Stougaard
spellingShingle Mariane Schmidt
Peter Stougaard
Correspondence
author_facet Mariane Schmidt
Peter Stougaard
author_sort Mariane Schmidt
title Correspondence
title_short Correspondence
title_full Correspondence
title_fullStr Correspondence
title_full_unstemmed Correspondence
title_sort correspondence
url http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.559.4983
http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf
long_lat ENVELOPE(-48.100,-48.100,61.150,61.150)
geographic Greenland
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genre Greenland
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http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf
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