Correspondence
A novel alkaliphilic and psychrophilic bacterium was isolated from the cold and alkaline ikaite tufa columns of the Ikka Fjord in south-west Greenland. According to 16S rRNA gene sequence analysis, strain GCM71T belonged to the family ‘Flexibacteraceae ’ in the phylum Bacteroidetes. Strain GCM71T, t...
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ftciteseerx:oai:CiteSeerX.psu:10.1.1.559.4983 2023-05-15T16:29:33+02:00 Correspondence Mariane Schmidt Peter Stougaard The Pennsylvania State University CiteSeerX Archives application/pdf http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.559.4983 http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf en eng http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.559.4983 http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf Metadata may be used without restrictions as long as the oai identifier remains attached to it. http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf text ftciteseerx 2016-01-08T11:56:09Z A novel alkaliphilic and psychrophilic bacterium was isolated from the cold and alkaline ikaite tufa columns of the Ikka Fjord in south-west Greenland. According to 16S rRNA gene sequence analysis, strain GCM71T belonged to the family ‘Flexibacteraceae ’ in the phylum Bacteroidetes. Strain GCM71T, together with five related isolates from ikaite columns, formed a separate cluster with 86–93 % gene sequence similarity to their closest relative, Belliella baltica. The G+C content of the DNA from strain GCM71T was 43?1 mol%, whereas that of B. baltica was reported to be 35 mol%. DNA–DNA hybridization between strain GCM71T and B. baltica was 9?5 %. The strain was red pigmented, Gram-negative, strictly aerobic with non-motile, rod-shaped cells. The optimal growth conditions for strain GCM71T were pH 9?2–10?0, 5 6C and 0?6 % NaCl. The fatty acid profile of the novel strain was dominated by branched and unsaturated fatty acids (90–97 %), with a high abundance of iso-C17: 1v9c (17?5 %), iso-C17: 0 3-OH (17?5 %) and summed feature 3, comprising iso-C15: 0 2-OH and/or C16: 1v7c (12?6 %). Phylogenetic, chemotaxonomic and physiological characteristics showed that the novel strain could not be affiliated to any known genus. A new genus, Rhodonellum gen. nov., is proposed to accommodate the novel strain. Strain GCM71T (=DSM 17998T=LMG 23454T) is proposed as the type strain of the type species, Rhodonellum psychrophilum sp. nov. Text Greenland Unknown Greenland Ikka ENVELOPE(-48.100,-48.100,61.150,61.150) |
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ftciteseerx |
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English |
description |
A novel alkaliphilic and psychrophilic bacterium was isolated from the cold and alkaline ikaite tufa columns of the Ikka Fjord in south-west Greenland. According to 16S rRNA gene sequence analysis, strain GCM71T belonged to the family ‘Flexibacteraceae ’ in the phylum Bacteroidetes. Strain GCM71T, together with five related isolates from ikaite columns, formed a separate cluster with 86–93 % gene sequence similarity to their closest relative, Belliella baltica. The G+C content of the DNA from strain GCM71T was 43?1 mol%, whereas that of B. baltica was reported to be 35 mol%. DNA–DNA hybridization between strain GCM71T and B. baltica was 9?5 %. The strain was red pigmented, Gram-negative, strictly aerobic with non-motile, rod-shaped cells. The optimal growth conditions for strain GCM71T were pH 9?2–10?0, 5 6C and 0?6 % NaCl. The fatty acid profile of the novel strain was dominated by branched and unsaturated fatty acids (90–97 %), with a high abundance of iso-C17: 1v9c (17?5 %), iso-C17: 0 3-OH (17?5 %) and summed feature 3, comprising iso-C15: 0 2-OH and/or C16: 1v7c (12?6 %). Phylogenetic, chemotaxonomic and physiological characteristics showed that the novel strain could not be affiliated to any known genus. A new genus, Rhodonellum gen. nov., is proposed to accommodate the novel strain. Strain GCM71T (=DSM 17998T=LMG 23454T) is proposed as the type strain of the type species, Rhodonellum psychrophilum sp. nov. |
author2 |
The Pennsylvania State University CiteSeerX Archives |
format |
Text |
author |
Mariane Schmidt Peter Stougaard |
spellingShingle |
Mariane Schmidt Peter Stougaard Correspondence |
author_facet |
Mariane Schmidt Peter Stougaard |
author_sort |
Mariane Schmidt |
title |
Correspondence |
title_short |
Correspondence |
title_full |
Correspondence |
title_fullStr |
Correspondence |
title_full_unstemmed |
Correspondence |
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correspondence |
url |
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.559.4983 http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf |
long_lat |
ENVELOPE(-48.100,-48.100,61.150,61.150) |
geographic |
Greenland Ikka |
geographic_facet |
Greenland Ikka |
genre |
Greenland |
genre_facet |
Greenland |
op_source |
http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf |
op_relation |
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.559.4983 http://ijsb.sgmjournals.org/content/56/12/2887.full.pdf |
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Metadata may be used without restrictions as long as the oai identifier remains attached to it. |
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1766019266262335488 |