Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic

Precise estimations of molecular rates are fundamental to our understanding of the processes of evolution. In principle, mutation and evolutionary rates for neutral regions of the same species are expected to be equal. However, a number of recent studies have shown that mutation rates estimated from...

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Main Authors: Craig D. Millar, Andrew Dodd, Jennifer Anderson, Gillian C. Gibb, Peter A. Ritchie ¤a, Carlo Baroni, Michael D. Woodhams, Michael D. Hendy, David M. Lambert ¤b
Other Authors: The Pennsylvania State University CiteSeerX Archives
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Online Access:http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.275.2699
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spelling ftciteseerx:oai:CiteSeerX.psu:10.1.1.275.2699 2023-05-15T13:40:59+02:00 Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic Craig D. Millar Andrew Dodd Jennifer Anderson Gillian C. Gibb Peter A. Ritchie ¤a Carlo Baroni Michael D. Woodhams Michael D. Hendy David M. Lambert ¤b The Pennsylvania State University CiteSeerX Archives application/zip http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.275.2699 en eng http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.275.2699 Metadata may be used without restrictions as long as the oai identifier remains attached to it. ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/2f/76/PLoS_Genet_2008_Oct_3_4(10)_e1000209.tar.gz text ftciteseerx 2016-01-07T20:47:53Z Precise estimations of molecular rates are fundamental to our understanding of the processes of evolution. In principle, mutation and evolutionary rates for neutral regions of the same species are expected to be equal. However, a number of recent studies have shown that mutation rates estimated from pedigree material are much faster than evolutionary rates measured over longer time periods. To resolve this apparent contradiction, we have examined the hypervariable region (HVR I) of the mitochondrial genome using families of Adélie penguins (Pygoscelis adeliae) from the Antarctic. We sequenced 344 bps of the HVR I from penguins comprising 508 families with 915 chicks, together with both their parents. All of the 62 germline heteroplasmies that we detected in mothers were also detected in their offspring, consistent with maternal inheritance. These data give an estimated mutation rate (m) of 0.55 mutations/site/Myrs (HPD 95 % confidence interval of 0.29–0.88 mutations/site/Myrs) after accounting for the persistence of these heteroplasmies and the sensitivity of current detection methods. In comparison, the rate of evolution (k) of the same HVR I region, determined using DNA sequences from 162 known age sub-fossil bones spanning a 37,000-year period, was 0.86 substitutions/site/Myrs (HPD 95 % confidence interval of 0.53 and 1.17). Importantly, the latter rate is not statistically different from our estimate of the mutation rate. Text Antarc* Antarctic Pygoscelis adeliae Unknown Antarctic The Antarctic
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description Precise estimations of molecular rates are fundamental to our understanding of the processes of evolution. In principle, mutation and evolutionary rates for neutral regions of the same species are expected to be equal. However, a number of recent studies have shown that mutation rates estimated from pedigree material are much faster than evolutionary rates measured over longer time periods. To resolve this apparent contradiction, we have examined the hypervariable region (HVR I) of the mitochondrial genome using families of Adélie penguins (Pygoscelis adeliae) from the Antarctic. We sequenced 344 bps of the HVR I from penguins comprising 508 families with 915 chicks, together with both their parents. All of the 62 germline heteroplasmies that we detected in mothers were also detected in their offspring, consistent with maternal inheritance. These data give an estimated mutation rate (m) of 0.55 mutations/site/Myrs (HPD 95 % confidence interval of 0.29–0.88 mutations/site/Myrs) after accounting for the persistence of these heteroplasmies and the sensitivity of current detection methods. In comparison, the rate of evolution (k) of the same HVR I region, determined using DNA sequences from 162 known age sub-fossil bones spanning a 37,000-year period, was 0.86 substitutions/site/Myrs (HPD 95 % confidence interval of 0.53 and 1.17). Importantly, the latter rate is not statistically different from our estimate of the mutation rate.
author2 The Pennsylvania State University CiteSeerX Archives
format Text
author Craig D. Millar
Andrew Dodd
Jennifer Anderson
Gillian C. Gibb
Peter A. Ritchie ¤a
Carlo Baroni
Michael D. Woodhams
Michael D. Hendy
David M. Lambert ¤b
spellingShingle Craig D. Millar
Andrew Dodd
Jennifer Anderson
Gillian C. Gibb
Peter A. Ritchie ¤a
Carlo Baroni
Michael D. Woodhams
Michael D. Hendy
David M. Lambert ¤b
Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic
author_facet Craig D. Millar
Andrew Dodd
Jennifer Anderson
Gillian C. Gibb
Peter A. Ritchie ¤a
Carlo Baroni
Michael D. Woodhams
Michael D. Hendy
David M. Lambert ¤b
author_sort Craig D. Millar
title Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic
title_short Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic
title_full Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic
title_fullStr Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic
title_full_unstemmed Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic
title_sort mutation and evolutionary rates in adélie penguins from the antarctic
url http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.275.2699
geographic Antarctic
The Antarctic
geographic_facet Antarctic
The Antarctic
genre Antarc*
Antarctic
Pygoscelis adeliae
genre_facet Antarc*
Antarctic
Pygoscelis adeliae
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