Multilocus Sequence Typing of Genital Chlamydia trachomatis in Norway Reveals Multiple New Sequence Types and a Large Genetic Diversity
Background: The Chlamydia trachomatis incidence rate in Finnmark, the most northern and sparsely populated county in Norway, has been twice the national average. This population based cross-sectional study among Finnmark high school students had the following aims: i) to examine distribution of mult...
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ftciteseerx:oai:CiteSeerX.psu:10.1.1.270.2947 2023-05-15T16:13:31+02:00 Multilocus Sequence Typing of Genital Chlamydia trachomatis in Norway Reveals Multiple New Sequence Types and a Large Genetic Diversity Kirsten Gravningen Linus Christerson Anne-sofie Furberg Gunnar Skov Simonsen Kristina Ödman Björn Herrmann The Pennsylvania State University CiteSeerX Archives application/zip http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.270.2947 en eng http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.270.2947 Metadata may be used without restrictions as long as the oai identifier remains attached to it. ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/64/c9/PLoS_One_2012_Mar_28_7(3)_e34452.tar.gz text ftciteseerx 2016-01-07T20:36:43Z Background: The Chlamydia trachomatis incidence rate in Finnmark, the most northern and sparsely populated county in Norway, has been twice the national average. This population based cross-sectional study among Finnmark high school students had the following aims: i) to examine distribution of multilocus sequence types (STs) of C. trachomatis in a previously unmapped area, ii) to compare chlamydia genetic diversity in Finnmark with that of two urban regions, and iii) to compare discriminatory capacity of multilocus sequence typing (MLST) with conventional ompA sequencing in a large number of chlamydia specimens. Methodology: ompA sequencing and a high-resolution MLST system based on PCR amplification and DNA sequencing of five highly variable genetic regions were used. Eighty chlamydia specimens from adolescents aged 15–20 years in Finnmark were collected in five high schools (n = 60) and from routine clinical samples in the laboratory (n = 20). These were compared to routine clinical samples from adolescents in Tromsø (n = 80) and Trondheim (n = 88), capitals of North and Central Norway, respectively. Principal Findings: ompA sequencing detected 11 genotypes in 248 specimens from all three areas. MLST displayed 50 STs providing a five-fold higher resolution. Two-thirds of all STs were novel. The common ompA E/Bour genotype comprised 46 % and resolved into 24 different STs. MLST identified the Swedish new variant of C. trachomatis not discriminated by Text Finnmark Tromsø Finnmark Unknown Norway Tromsø |
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description |
Background: The Chlamydia trachomatis incidence rate in Finnmark, the most northern and sparsely populated county in Norway, has been twice the national average. This population based cross-sectional study among Finnmark high school students had the following aims: i) to examine distribution of multilocus sequence types (STs) of C. trachomatis in a previously unmapped area, ii) to compare chlamydia genetic diversity in Finnmark with that of two urban regions, and iii) to compare discriminatory capacity of multilocus sequence typing (MLST) with conventional ompA sequencing in a large number of chlamydia specimens. Methodology: ompA sequencing and a high-resolution MLST system based on PCR amplification and DNA sequencing of five highly variable genetic regions were used. Eighty chlamydia specimens from adolescents aged 15–20 years in Finnmark were collected in five high schools (n = 60) and from routine clinical samples in the laboratory (n = 20). These were compared to routine clinical samples from adolescents in Tromsø (n = 80) and Trondheim (n = 88), capitals of North and Central Norway, respectively. Principal Findings: ompA sequencing detected 11 genotypes in 248 specimens from all three areas. MLST displayed 50 STs providing a five-fold higher resolution. Two-thirds of all STs were novel. The common ompA E/Bour genotype comprised 46 % and resolved into 24 different STs. MLST identified the Swedish new variant of C. trachomatis not discriminated by |
author2 |
The Pennsylvania State University CiteSeerX Archives |
format |
Text |
author |
Kirsten Gravningen Linus Christerson Anne-sofie Furberg Gunnar Skov Simonsen Kristina Ödman Björn Herrmann |
spellingShingle |
Kirsten Gravningen Linus Christerson Anne-sofie Furberg Gunnar Skov Simonsen Kristina Ödman Björn Herrmann Multilocus Sequence Typing of Genital Chlamydia trachomatis in Norway Reveals Multiple New Sequence Types and a Large Genetic Diversity |
author_facet |
Kirsten Gravningen Linus Christerson Anne-sofie Furberg Gunnar Skov Simonsen Kristina Ödman Björn Herrmann |
author_sort |
Kirsten Gravningen |
title |
Multilocus Sequence Typing of Genital Chlamydia trachomatis in Norway Reveals Multiple New Sequence Types and a Large Genetic Diversity |
title_short |
Multilocus Sequence Typing of Genital Chlamydia trachomatis in Norway Reveals Multiple New Sequence Types and a Large Genetic Diversity |
title_full |
Multilocus Sequence Typing of Genital Chlamydia trachomatis in Norway Reveals Multiple New Sequence Types and a Large Genetic Diversity |
title_fullStr |
Multilocus Sequence Typing of Genital Chlamydia trachomatis in Norway Reveals Multiple New Sequence Types and a Large Genetic Diversity |
title_full_unstemmed |
Multilocus Sequence Typing of Genital Chlamydia trachomatis in Norway Reveals Multiple New Sequence Types and a Large Genetic Diversity |
title_sort |
multilocus sequence typing of genital chlamydia trachomatis in norway reveals multiple new sequence types and a large genetic diversity |
url |
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.270.2947 |
geographic |
Norway Tromsø |
geographic_facet |
Norway Tromsø |
genre |
Finnmark Tromsø Finnmark |
genre_facet |
Finnmark Tromsø Finnmark |
op_source |
ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/64/c9/PLoS_One_2012_Mar_28_7(3)_e34452.tar.gz |
op_relation |
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.270.2947 |
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Metadata may be used without restrictions as long as the oai identifier remains attached to it. |
_version_ |
1765999264547209216 |