Automated sperm head morphology analyzer for open-source software
Abstract Sperm head morphology has been identified as a characteristic that can be used to predict a male's semen quality. In the present study, we have developed an automated sperm head morphology analysis (ASMA) plug-in for open-source ImageJ software (http://rsbweb.nih.gov/ij/). We describe...
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ftciteseerx:oai:CiteSeerX.psu:10.1.1.1046.3771 2023-05-15T15:27:27+02:00 Automated sperm head morphology analyzer for open-source software I A E Butts M A R Ward M K Litvak T E Pitcher S M H Alavi E A Trippel R M Rideout The Pennsylvania State University CiteSeerX Archives application/pdf http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1046.3771 http://web2.uwindsor.ca/biology/pitcher/Pitcher%20lab/Publications_files/Butts%20et%20al%202011.pdf en eng http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1046.3771 http://web2.uwindsor.ca/biology/pitcher/Pitcher%20lab/Publications_files/Butts%20et%20al%202011.pdf Metadata may be used without restrictions as long as the oai identifier remains attached to it. http://web2.uwindsor.ca/biology/pitcher/Pitcher%20lab/Publications_files/Butts%20et%20al%202011.pdf text ftciteseerx 2020-04-05T00:19:21Z Abstract Sperm head morphology has been identified as a characteristic that can be used to predict a male's semen quality. In the present study, we have developed an automated sperm head morphology analysis (ASMA) plug-in for open-source ImageJ software (http://rsbweb.nih.gov/ij/). We describe the plug-in's functionality, and confirm its validity for sperm head morphology analysis using fish sperm. Sperm head morphological measurements (length and width) made with the ASMA plug-in did not differ from manual measurements. Using the plug-in to measure sperm head-shaped objects of known size, the associated plug-in error rate was Ͻ 0.5%. Brightness and contrast ratios influenced sperm head measurements, suggesting the need for standardized protocols. This plug-in was effective at measuring elliptical (i.e., Atlantic cod) as well as slightly irregular (i.e., Chinook salmon) shaped sperm heads. In conclusion, our ASMA plug-in represents a versatile alternative to costly sperm morphology software. Text atlantic cod Unknown |
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English |
description |
Abstract Sperm head morphology has been identified as a characteristic that can be used to predict a male's semen quality. In the present study, we have developed an automated sperm head morphology analysis (ASMA) plug-in for open-source ImageJ software (http://rsbweb.nih.gov/ij/). We describe the plug-in's functionality, and confirm its validity for sperm head morphology analysis using fish sperm. Sperm head morphological measurements (length and width) made with the ASMA plug-in did not differ from manual measurements. Using the plug-in to measure sperm head-shaped objects of known size, the associated plug-in error rate was Ͻ 0.5%. Brightness and contrast ratios influenced sperm head measurements, suggesting the need for standardized protocols. This plug-in was effective at measuring elliptical (i.e., Atlantic cod) as well as slightly irregular (i.e., Chinook salmon) shaped sperm heads. In conclusion, our ASMA plug-in represents a versatile alternative to costly sperm morphology software. |
author2 |
The Pennsylvania State University CiteSeerX Archives |
format |
Text |
author |
I A E Butts M A R Ward M K Litvak T E Pitcher S M H Alavi E A Trippel R M Rideout |
spellingShingle |
I A E Butts M A R Ward M K Litvak T E Pitcher S M H Alavi E A Trippel R M Rideout Automated sperm head morphology analyzer for open-source software |
author_facet |
I A E Butts M A R Ward M K Litvak T E Pitcher S M H Alavi E A Trippel R M Rideout |
author_sort |
I A E Butts |
title |
Automated sperm head morphology analyzer for open-source software |
title_short |
Automated sperm head morphology analyzer for open-source software |
title_full |
Automated sperm head morphology analyzer for open-source software |
title_fullStr |
Automated sperm head morphology analyzer for open-source software |
title_full_unstemmed |
Automated sperm head morphology analyzer for open-source software |
title_sort |
automated sperm head morphology analyzer for open-source software |
url |
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1046.3771 http://web2.uwindsor.ca/biology/pitcher/Pitcher%20lab/Publications_files/Butts%20et%20al%202011.pdf |
genre |
atlantic cod |
genre_facet |
atlantic cod |
op_source |
http://web2.uwindsor.ca/biology/pitcher/Pitcher%20lab/Publications_files/Butts%20et%20al%202011.pdf |
op_relation |
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1046.3771 http://web2.uwindsor.ca/biology/pitcher/Pitcher%20lab/Publications_files/Butts%20et%20al%202011.pdf |
op_rights |
Metadata may be used without restrictions as long as the oai identifier remains attached to it. |
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1766357889610416128 |