Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers

International audience The common dentex, Dentex dentex, is a fish species which inhabits marine environments in the Mediterranean and Northeast Atlantic regions. This is an important species from an ecological, economic and conservation perspective, however critical information on its population ge...

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Published in:PLOS ONE
Main Authors: Viret, Alexiane, Tsaparis, Dimitris, Tsigenopoulos, Costas, Berrebi, Patrick, Sabatini, Andrea, Arculeo, Marco, Fassatoui, Chiheb, Magoulas, Antonios, Marengo, Michel, Morales-Nin, Beatriz, Caill-Milly, Nathalie, Durieux, Eric
Other Authors: Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement IRD : UR226-Centre National de la Recherche Scientifique (CNRS), Hellenic Centre for Marine Research (HCMR), Università degli Studi di Cagliari = University of Cagliari (UniCa), Università degli studi di Palermo - University of Palermo, Institut National Agronomique de Tunisie (INAT), Ecosystèmes et Ressources Aquatiques (UR03AGRO1), Institut National Agronomique de Tunisie, Sciences pour l'environnement (SPE), Université Pascal Paoli (UPP)-Centre National de la Recherche Scientifique (CNRS), Stella Mare, Institut Mediterrani d'Estudis Avancats (IMEDEA), Consejo Superior de Investigaciones Cientificas España = Spanish National Research Council Spain (CSIC)-Universitat de les Illes Balears = Universidad de las Islas Baleares = University of the Balearic Islands (UIB), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)
Format: Article in Journal/Newspaper
Language:English
Published: HAL CCSD 2018
Subjects:
Online Access:https://hal.umontpellier.fr/hal-03117680
https://hal.umontpellier.fr/hal-03117680/document
https://hal.umontpellier.fr/hal-03117680/file/pone.0203866.pdf
https://doi.org/10.1371/journal.pone.0203866
id ftciradhal:oai:HAL:hal-03117680v1
record_format openpolar
institution Open Polar
collection CIRAD: HAL (Agricultural Research for Development)
op_collection_id ftciradhal
language English
topic Haplotypes
Phylogeography
Population genetics
Atlantic Ocean
Marine fish
Mitochondrial DNA
Polymerase chain reaction
Mediterranean Sea
[SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics
[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]
spellingShingle Haplotypes
Phylogeography
Population genetics
Atlantic Ocean
Marine fish
Mitochondrial DNA
Polymerase chain reaction
Mediterranean Sea
[SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics
[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]
Viret, Alexiane
Tsaparis, Dimitris
Tsigenopoulos, Costas
Berrebi, Patrick
Sabatini, Andrea
Arculeo, Marco
Fassatoui, Chiheb
Magoulas, Antonios
Marengo, Michel
Morales-Nin, Beatriz
Caill-Milly, Nathalie
Durieux, Eric
Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers
topic_facet Haplotypes
Phylogeography
Population genetics
Atlantic Ocean
Marine fish
Mitochondrial DNA
Polymerase chain reaction
Mediterranean Sea
[SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics
[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]
description International audience The common dentex, Dentex dentex, is a fish species which inhabits marine environments in the Mediterranean and Northeast Atlantic regions. This is an important species from an ecological, economic and conservation perspective, however critical information on its population genetic structure is lacking. Most samples were obtained from the Mediterranean Sea (17 sites) with an emphasis around Corsica (5 sites), plus one Atlantic Ocean site. This provided an opportunity to examine genetic structuring at local and broader scales to provide science based data for the management of fishing stocks in the region. Two mitochondrial regions were examined (D-loop and COI) along with eight microsatellite loci. The COI data was combined with publicly available sequences and demonstrated past misidentification of common dentex. All markers indicated the absence of population genetic structure from the Bay of Biscay to the eastern Mediterranean Sea. Bayesian approaches, as well as the statistical tests performed on the allelic frequencies from microsatellite loci, indicated low differentiation between samples; there was only a slight (p = 0.05) indication of isolation by distance. Common dentex is a marine fish species with a unique panmictic population in the Mediterranean and likely in the Atlantic Ocean as well.
author2 Institut des Sciences de l'Evolution de Montpellier (UMR ISEM)
Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE)
Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement IRD : UR226-Centre National de la Recherche Scientifique (CNRS)
Hellenic Centre for Marine Research (HCMR)
Università degli Studi di Cagliari = University of Cagliari (UniCa)
Università degli studi di Palermo - University of Palermo
Institut National Agronomique de Tunisie (INAT)
Ecosystèmes et Ressources Aquatiques (UR03AGRO1)
Institut National Agronomique de Tunisie
Sciences pour l'environnement (SPE)
Université Pascal Paoli (UPP)-Centre National de la Recherche Scientifique (CNRS)
Stella Mare
Institut Mediterrani d'Estudis Avancats (IMEDEA)
Consejo Superior de Investigaciones Cientificas España = Spanish National Research Council Spain (CSIC)-Universitat de les Illes Balears = Universidad de las Islas Baleares = University of the Balearic Islands (UIB)
Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)
format Article in Journal/Newspaper
author Viret, Alexiane
Tsaparis, Dimitris
Tsigenopoulos, Costas
Berrebi, Patrick
Sabatini, Andrea
Arculeo, Marco
Fassatoui, Chiheb
Magoulas, Antonios
Marengo, Michel
Morales-Nin, Beatriz
Caill-Milly, Nathalie
Durieux, Eric
author_facet Viret, Alexiane
Tsaparis, Dimitris
Tsigenopoulos, Costas
Berrebi, Patrick
Sabatini, Andrea
Arculeo, Marco
Fassatoui, Chiheb
Magoulas, Antonios
Marengo, Michel
Morales-Nin, Beatriz
Caill-Milly, Nathalie
Durieux, Eric
author_sort Viret, Alexiane
title Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers
title_short Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers
title_full Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers
title_fullStr Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers
title_full_unstemmed Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers
title_sort absence of spatial genetic structure in common dentex (dentex dentex linnaeus, 1758) in the mediterranean sea as evidenced by nuclear and mitochondrial molecular markers
publisher HAL CCSD
publishDate 2018
url https://hal.umontpellier.fr/hal-03117680
https://hal.umontpellier.fr/hal-03117680/document
https://hal.umontpellier.fr/hal-03117680/file/pone.0203866.pdf
https://doi.org/10.1371/journal.pone.0203866
genre Northeast Atlantic
genre_facet Northeast Atlantic
op_source ISSN: 1932-6203
EISSN: 1932-6203
PLoS ONE
https://hal.umontpellier.fr/hal-03117680
PLoS ONE, 2018, 13 (9), pp.e0203866. ⟨10.1371/journal.pone.0203866⟩
op_relation info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pone.0203866
hal-03117680
https://hal.umontpellier.fr/hal-03117680
https://hal.umontpellier.fr/hal-03117680/document
https://hal.umontpellier.fr/hal-03117680/file/pone.0203866.pdf
doi:10.1371/journal.pone.0203866
op_rights http://creativecommons.org/licenses/by/
info:eu-repo/semantics/OpenAccess
op_doi https://doi.org/10.1371/journal.pone.0203866
container_title PLOS ONE
container_volume 13
container_issue 9
container_start_page e0203866
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spelling ftciradhal:oai:HAL:hal-03117680v1 2024-05-19T07:45:49+00:00 Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers Viret, Alexiane Tsaparis, Dimitris Tsigenopoulos, Costas Berrebi, Patrick Sabatini, Andrea Arculeo, Marco Fassatoui, Chiheb Magoulas, Antonios Marengo, Michel Morales-Nin, Beatriz Caill-Milly, Nathalie Durieux, Eric Institut des Sciences de l'Evolution de Montpellier (UMR ISEM) Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE) Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement IRD : UR226-Centre National de la Recherche Scientifique (CNRS) Hellenic Centre for Marine Research (HCMR) Università degli Studi di Cagliari = University of Cagliari (UniCa) Università degli studi di Palermo - University of Palermo Institut National Agronomique de Tunisie (INAT) Ecosystèmes et Ressources Aquatiques (UR03AGRO1) Institut National Agronomique de Tunisie Sciences pour l'environnement (SPE) Université Pascal Paoli (UPP)-Centre National de la Recherche Scientifique (CNRS) Stella Mare Institut Mediterrani d'Estudis Avancats (IMEDEA) Consejo Superior de Investigaciones Cientificas España = Spanish National Research Council Spain (CSIC)-Universitat de les Illes Balears = Universidad de las Islas Baleares = University of the Balearic Islands (UIB) Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER) 2018 https://hal.umontpellier.fr/hal-03117680 https://hal.umontpellier.fr/hal-03117680/document https://hal.umontpellier.fr/hal-03117680/file/pone.0203866.pdf https://doi.org/10.1371/journal.pone.0203866 en eng HAL CCSD Public Library of Science info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pone.0203866 hal-03117680 https://hal.umontpellier.fr/hal-03117680 https://hal.umontpellier.fr/hal-03117680/document https://hal.umontpellier.fr/hal-03117680/file/pone.0203866.pdf doi:10.1371/journal.pone.0203866 http://creativecommons.org/licenses/by/ info:eu-repo/semantics/OpenAccess ISSN: 1932-6203 EISSN: 1932-6203 PLoS ONE https://hal.umontpellier.fr/hal-03117680 PLoS ONE, 2018, 13 (9), pp.e0203866. ⟨10.1371/journal.pone.0203866⟩ Haplotypes Phylogeography Population genetics Atlantic Ocean Marine fish Mitochondrial DNA Polymerase chain reaction Mediterranean Sea [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE] info:eu-repo/semantics/article Journal articles 2018 ftciradhal https://doi.org/10.1371/journal.pone.0203866 2024-05-02T00:15:43Z International audience The common dentex, Dentex dentex, is a fish species which inhabits marine environments in the Mediterranean and Northeast Atlantic regions. This is an important species from an ecological, economic and conservation perspective, however critical information on its population genetic structure is lacking. Most samples were obtained from the Mediterranean Sea (17 sites) with an emphasis around Corsica (5 sites), plus one Atlantic Ocean site. This provided an opportunity to examine genetic structuring at local and broader scales to provide science based data for the management of fishing stocks in the region. Two mitochondrial regions were examined (D-loop and COI) along with eight microsatellite loci. The COI data was combined with publicly available sequences and demonstrated past misidentification of common dentex. All markers indicated the absence of population genetic structure from the Bay of Biscay to the eastern Mediterranean Sea. Bayesian approaches, as well as the statistical tests performed on the allelic frequencies from microsatellite loci, indicated low differentiation between samples; there was only a slight (p = 0.05) indication of isolation by distance. Common dentex is a marine fish species with a unique panmictic population in the Mediterranean and likely in the Atlantic Ocean as well. Article in Journal/Newspaper Northeast Atlantic CIRAD: HAL (Agricultural Research for Development) PLOS ONE 13 9 e0203866