Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats
Bats are a reservoir for a diverse range of viruses, including coronaviruses (CoVs). To determine the presence of CoVs in French bats, fecal samples were collected between July and August of 2014 from four bat species in seven different locations around the city of Bourges in France. We present for...
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Online Access: | http://agritrop.cirad.fr/578492/ http://agritrop.cirad.fr/578492/1/viruses-07-02937-2.pdf https://doi.org/10.3390/v7122937 |
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ftcirad:oai:agritrop.cirad.fr:578492 2023-05-15T17:59:55+02:00 Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats Goffard, Anne Demanche, Christine Arthur, Laurent Pinçon, Claire Michaux, Johan Dubuisson, Jean France Europe 2015 text http://agritrop.cirad.fr/578492/ http://agritrop.cirad.fr/578492/1/viruses-07-02937-2.pdf https://doi.org/10.3390/v7122937 eng eng http://agritrop.cirad.fr/578492/ Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats. Goffard Anne, Demanche Christine, Arthur Laurent, Pinçon Claire, Michaux Johan, Dubuisson Jean. 2015. Viruses, 7 (12) : 6279-6290.https://doi.org/10.3390/v7122937 <https://doi.org/10.3390/v7122937> http://agritrop.cirad.fr/578492/1/viruses-07-02937-2.pdf cc_by info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ CC-BY Viruses L73 - Maladies des animaux L72 - Organismes nuisibles des animaux L60 - Taxonomie et géographie animales Coronavirinae Coronaviridae Phylogénie Chiroptera Distribution géographique Transmission des maladies Hôte Identification Biologie moléculaire Alphacoronavirus http://aims.fao.org/aos/agrovoc/c_37003 http://aims.fao.org/aos/agrovoc/c_1902 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_1560 http://aims.fao.org/aos/agrovoc/c_5083 http://aims.fao.org/aos/agrovoc/c_2329 http://aims.fao.org/aos/agrovoc/c_3673 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_4891 http://aims.fao.org/aos/agrovoc/c_21adac85 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_2724 article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion 2015 ftcirad https://doi.org/10.3390/v7122937 2022-04-19T22:47:18Z Bats are a reservoir for a diverse range of viruses, including coronaviruses (CoVs). To determine the presence of CoVs in French bats, fecal samples were collected between July and August of 2014 from four bat species in seven different locations around the city of Bourges in France. We present for the first time the presence of alpha-CoVs in French Pipistrellus pipistrellus bat species with an estimated prevalence of 4.2%. Based on the analysis of a fragment of the RNA-dependent RNA polymerase (RdRp) gene, phylogenetic analyses show that alpha-CoVs sequences detected in French bats are closely related to other European bat alpha-CoVs. Phylogeographic analyses of RdRp sequences show that several CoVs strains circulate in European bats: (i) old strains detected that have probably diverged a long time ago and are detected in different bat subspecies; (ii) strains detected in Myotis and Pipistrellus bat species that have more recently diverged. Our findings support previous observations describing the complexity of the detected CoVs in bats worldwide. Article in Journal/Newspaper Pipistrellus pipistrellus CIRAD: Agritrop (Centre de coopération internationale en recherche agronomique pour le développement) Viruses 7 12 6279 6290 |
institution |
Open Polar |
collection |
CIRAD: Agritrop (Centre de coopération internationale en recherche agronomique pour le développement) |
op_collection_id |
ftcirad |
language |
English |
topic |
L73 - Maladies des animaux L72 - Organismes nuisibles des animaux L60 - Taxonomie et géographie animales Coronavirinae Coronaviridae Phylogénie Chiroptera Distribution géographique Transmission des maladies Hôte Identification Biologie moléculaire Alphacoronavirus http://aims.fao.org/aos/agrovoc/c_37003 http://aims.fao.org/aos/agrovoc/c_1902 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_1560 http://aims.fao.org/aos/agrovoc/c_5083 http://aims.fao.org/aos/agrovoc/c_2329 http://aims.fao.org/aos/agrovoc/c_3673 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_4891 http://aims.fao.org/aos/agrovoc/c_21adac85 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_2724 |
spellingShingle |
L73 - Maladies des animaux L72 - Organismes nuisibles des animaux L60 - Taxonomie et géographie animales Coronavirinae Coronaviridae Phylogénie Chiroptera Distribution géographique Transmission des maladies Hôte Identification Biologie moléculaire Alphacoronavirus http://aims.fao.org/aos/agrovoc/c_37003 http://aims.fao.org/aos/agrovoc/c_1902 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_1560 http://aims.fao.org/aos/agrovoc/c_5083 http://aims.fao.org/aos/agrovoc/c_2329 http://aims.fao.org/aos/agrovoc/c_3673 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_4891 http://aims.fao.org/aos/agrovoc/c_21adac85 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_2724 Goffard, Anne Demanche, Christine Arthur, Laurent Pinçon, Claire Michaux, Johan Dubuisson, Jean Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats |
topic_facet |
L73 - Maladies des animaux L72 - Organismes nuisibles des animaux L60 - Taxonomie et géographie animales Coronavirinae Coronaviridae Phylogénie Chiroptera Distribution géographique Transmission des maladies Hôte Identification Biologie moléculaire Alphacoronavirus http://aims.fao.org/aos/agrovoc/c_37003 http://aims.fao.org/aos/agrovoc/c_1902 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_1560 http://aims.fao.org/aos/agrovoc/c_5083 http://aims.fao.org/aos/agrovoc/c_2329 http://aims.fao.org/aos/agrovoc/c_3673 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_4891 http://aims.fao.org/aos/agrovoc/c_21adac85 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_2724 |
description |
Bats are a reservoir for a diverse range of viruses, including coronaviruses (CoVs). To determine the presence of CoVs in French bats, fecal samples were collected between July and August of 2014 from four bat species in seven different locations around the city of Bourges in France. We present for the first time the presence of alpha-CoVs in French Pipistrellus pipistrellus bat species with an estimated prevalence of 4.2%. Based on the analysis of a fragment of the RNA-dependent RNA polymerase (RdRp) gene, phylogenetic analyses show that alpha-CoVs sequences detected in French bats are closely related to other European bat alpha-CoVs. Phylogeographic analyses of RdRp sequences show that several CoVs strains circulate in European bats: (i) old strains detected that have probably diverged a long time ago and are detected in different bat subspecies; (ii) strains detected in Myotis and Pipistrellus bat species that have more recently diverged. Our findings support previous observations describing the complexity of the detected CoVs in bats worldwide. |
format |
Article in Journal/Newspaper |
author |
Goffard, Anne Demanche, Christine Arthur, Laurent Pinçon, Claire Michaux, Johan Dubuisson, Jean |
author_facet |
Goffard, Anne Demanche, Christine Arthur, Laurent Pinçon, Claire Michaux, Johan Dubuisson, Jean |
author_sort |
Goffard, Anne |
title |
Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats |
title_short |
Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats |
title_full |
Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats |
title_fullStr |
Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats |
title_full_unstemmed |
Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats |
title_sort |
alphacoronaviruses detected in french bats are phylogeographically linked to coronaviruses of european bats |
publishDate |
2015 |
url |
http://agritrop.cirad.fr/578492/ http://agritrop.cirad.fr/578492/1/viruses-07-02937-2.pdf https://doi.org/10.3390/v7122937 |
op_coverage |
France Europe |
genre |
Pipistrellus pipistrellus |
genre_facet |
Pipistrellus pipistrellus |
op_source |
Viruses |
op_relation |
http://agritrop.cirad.fr/578492/ Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats. Goffard Anne, Demanche Christine, Arthur Laurent, Pinçon Claire, Michaux Johan, Dubuisson Jean. 2015. Viruses, 7 (12) : 6279-6290.https://doi.org/10.3390/v7122937 <https://doi.org/10.3390/v7122937> http://agritrop.cirad.fr/578492/1/viruses-07-02937-2.pdf |
op_rights |
cc_by info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.3390/v7122937 |
container_title |
Viruses |
container_volume |
7 |
container_issue |
12 |
container_start_page |
6279 |
op_container_end_page |
6290 |
_version_ |
1766168813721616384 |