Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex)
Black rats are major invasive vertebrate pests with severe ecological, economic and health impacts. Remarkably, their evolutionary history has received little attention, and there is no firm agreement on how many species should be recognized within the black rat complex. This species complex is nati...
Published in: | Molecular Ecology |
---|---|
Main Authors: | , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
2013
|
Subjects: | |
Online Access: | http://agritrop.cirad.fr/567682/ http://agritrop.cirad.fr/567682/1/document_567682.pdf https://doi.org/10.1111/mec.12149 |
id |
ftcirad:oai:agritrop.cirad.fr:567682 |
---|---|
record_format |
openpolar |
spelling |
ftcirad:oai:agritrop.cirad.fr:567682 2023-05-15T18:05:43+02:00 Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex) Pagès, Marie Bazin, Eric Galan, Maxime Chaval, Yannick Claude, Julien Herbreteau, Vincent Michaux, Johan Piry, Sylvain Morand, Serge Cosson, Jean François Thaïlande Cambodge République démocratique populaire lao Asie du Sud-Est 2013 application/pdf http://agritrop.cirad.fr/567682/ http://agritrop.cirad.fr/567682/1/document_567682.pdf https://doi.org/10.1111/mec.12149 eng eng http://agritrop.cirad.fr/567682/ Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex). Pagès Marie, Bazin Eric, Galan Maxime, Chaval Yannick, Claude Julien, Herbreteau Vincent, Michaux Johan, Piry Sylvain, Morand Serge, Cosson Jean François. 2013. Molecular Ecology, 22 (4) : 1019-1034.https://doi.org/10.1111/mec.12149 <https://doi.org/10.1111/mec.12149> http://agritrop.cirad.fr/567682/1/document_567682.pdf Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html Molecular Ecology L72 - Organismes nuisibles des animaux L60 - Taxonomie et géographie animales L10 - Génétique et amélioration des animaux Rat Phylogénie Taxon Taxonomie génétique animale Cytogénétique Microsatellite http://aims.fao.org/aos/agrovoc/c_6464 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_7624 http://aims.fao.org/aos/agrovoc/c_7631 http://aims.fao.org/aos/agrovoc/c_49986 http://aims.fao.org/aos/agrovoc/c_2089 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_7701 http://aims.fao.org/aos/agrovoc/c_4073 http://aims.fao.org/aos/agrovoc/c_12076 http://aims.fao.org/aos/agrovoc/c_7260 article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion 2013 ftcirad https://doi.org/10.1111/mec.12149 2022-04-05T22:48:29Z Black rats are major invasive vertebrate pests with severe ecological, economic and health impacts. Remarkably, their evolutionary history has received little attention, and there is no firm agreement on how many species should be recognized within the black rat complex. This species complex is native to India and Southeast Asia. According to current taxonomic classification, there are three taxa living in sympatry in several parts of Thailand, Cambodia and Lao People's Democratic Republic, where this study was conducted: two accepted species (Rattus tanezumi, Rattus sakeratensis) and an additional mitochondrial lineage of unclear taxonomic status referred to here as 'Rattus R3'. We used extensive sampling, morphological data and diverse genetic markers differing in rates of evolution and parental inheritance (two mitochondrial DNA genes, one nuclear gene and eight microsatellite loci) to assess the reproductive isolation of these three taxa. Two close Asian relatives, Rattus argentiventer and Rattus exulans, were also included in the genetic analyses. Genetic analyses revealed discordance between the mitochondrial and nuclear data. Mitochondrial phylogeny studies identified three reciprocally monophyletic clades in the black rat complex. However, studies of the phylogeny of the nuclear exon interphotoreceptor retinoid-binding protein gene and clustering and assignation analyses with eight microsatellites failed to separate R. tanezumi and R3. Morphometric analyses were consistent with nuclear data. The incongruence between mitochondrial and nuclear (and morphological) data rendered R. tanezumi/R3 paraphyletic for mitochondrial lineages with respect to R. sakeratensis. Various evolutionary processes, such as shared ancestral polymorphism and incomplete lineage sorting or hybridization with massive mitochondrial introgression between species, may account for this unusual genetic pattern in mammals. Article in Journal/Newspaper Rattus rattus CIRAD: Agritrop (Centre de coopération internationale en recherche agronomique pour le développement) Molecular Ecology 22 4 1019 1034 |
institution |
Open Polar |
collection |
CIRAD: Agritrop (Centre de coopération internationale en recherche agronomique pour le développement) |
op_collection_id |
ftcirad |
language |
English |
topic |
L72 - Organismes nuisibles des animaux L60 - Taxonomie et géographie animales L10 - Génétique et amélioration des animaux Rat Phylogénie Taxon Taxonomie génétique animale Cytogénétique Microsatellite http://aims.fao.org/aos/agrovoc/c_6464 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_7624 http://aims.fao.org/aos/agrovoc/c_7631 http://aims.fao.org/aos/agrovoc/c_49986 http://aims.fao.org/aos/agrovoc/c_2089 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_7701 http://aims.fao.org/aos/agrovoc/c_4073 http://aims.fao.org/aos/agrovoc/c_12076 http://aims.fao.org/aos/agrovoc/c_7260 |
spellingShingle |
L72 - Organismes nuisibles des animaux L60 - Taxonomie et géographie animales L10 - Génétique et amélioration des animaux Rat Phylogénie Taxon Taxonomie génétique animale Cytogénétique Microsatellite http://aims.fao.org/aos/agrovoc/c_6464 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_7624 http://aims.fao.org/aos/agrovoc/c_7631 http://aims.fao.org/aos/agrovoc/c_49986 http://aims.fao.org/aos/agrovoc/c_2089 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_7701 http://aims.fao.org/aos/agrovoc/c_4073 http://aims.fao.org/aos/agrovoc/c_12076 http://aims.fao.org/aos/agrovoc/c_7260 Pagès, Marie Bazin, Eric Galan, Maxime Chaval, Yannick Claude, Julien Herbreteau, Vincent Michaux, Johan Piry, Sylvain Morand, Serge Cosson, Jean François Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex) |
topic_facet |
L72 - Organismes nuisibles des animaux L60 - Taxonomie et géographie animales L10 - Génétique et amélioration des animaux Rat Phylogénie Taxon Taxonomie génétique animale Cytogénétique Microsatellite http://aims.fao.org/aos/agrovoc/c_6464 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_7624 http://aims.fao.org/aos/agrovoc/c_7631 http://aims.fao.org/aos/agrovoc/c_49986 http://aims.fao.org/aos/agrovoc/c_2089 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_7701 http://aims.fao.org/aos/agrovoc/c_4073 http://aims.fao.org/aos/agrovoc/c_12076 http://aims.fao.org/aos/agrovoc/c_7260 |
description |
Black rats are major invasive vertebrate pests with severe ecological, economic and health impacts. Remarkably, their evolutionary history has received little attention, and there is no firm agreement on how many species should be recognized within the black rat complex. This species complex is native to India and Southeast Asia. According to current taxonomic classification, there are three taxa living in sympatry in several parts of Thailand, Cambodia and Lao People's Democratic Republic, where this study was conducted: two accepted species (Rattus tanezumi, Rattus sakeratensis) and an additional mitochondrial lineage of unclear taxonomic status referred to here as 'Rattus R3'. We used extensive sampling, morphological data and diverse genetic markers differing in rates of evolution and parental inheritance (two mitochondrial DNA genes, one nuclear gene and eight microsatellite loci) to assess the reproductive isolation of these three taxa. Two close Asian relatives, Rattus argentiventer and Rattus exulans, were also included in the genetic analyses. Genetic analyses revealed discordance between the mitochondrial and nuclear data. Mitochondrial phylogeny studies identified three reciprocally monophyletic clades in the black rat complex. However, studies of the phylogeny of the nuclear exon interphotoreceptor retinoid-binding protein gene and clustering and assignation analyses with eight microsatellites failed to separate R. tanezumi and R3. Morphometric analyses were consistent with nuclear data. The incongruence between mitochondrial and nuclear (and morphological) data rendered R. tanezumi/R3 paraphyletic for mitochondrial lineages with respect to R. sakeratensis. Various evolutionary processes, such as shared ancestral polymorphism and incomplete lineage sorting or hybridization with massive mitochondrial introgression between species, may account for this unusual genetic pattern in mammals. |
format |
Article in Journal/Newspaper |
author |
Pagès, Marie Bazin, Eric Galan, Maxime Chaval, Yannick Claude, Julien Herbreteau, Vincent Michaux, Johan Piry, Sylvain Morand, Serge Cosson, Jean François |
author_facet |
Pagès, Marie Bazin, Eric Galan, Maxime Chaval, Yannick Claude, Julien Herbreteau, Vincent Michaux, Johan Piry, Sylvain Morand, Serge Cosson, Jean François |
author_sort |
Pagès, Marie |
title |
Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex) |
title_short |
Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex) |
title_full |
Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex) |
title_fullStr |
Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex) |
title_full_unstemmed |
Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex) |
title_sort |
cytonuclear discordance among southeast asian black rats (rattus rattus complex) |
publishDate |
2013 |
url |
http://agritrop.cirad.fr/567682/ http://agritrop.cirad.fr/567682/1/document_567682.pdf https://doi.org/10.1111/mec.12149 |
op_coverage |
Thaïlande Cambodge République démocratique populaire lao Asie du Sud-Est |
genre |
Rattus rattus |
genre_facet |
Rattus rattus |
op_source |
Molecular Ecology |
op_relation |
http://agritrop.cirad.fr/567682/ Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex). Pagès Marie, Bazin Eric, Galan Maxime, Chaval Yannick, Claude Julien, Herbreteau Vincent, Michaux Johan, Piry Sylvain, Morand Serge, Cosson Jean François. 2013. Molecular Ecology, 22 (4) : 1019-1034.https://doi.org/10.1111/mec.12149 <https://doi.org/10.1111/mec.12149> http://agritrop.cirad.fr/567682/1/document_567682.pdf |
op_rights |
Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html |
op_doi |
https://doi.org/10.1111/mec.12149 |
container_title |
Molecular Ecology |
container_volume |
22 |
container_issue |
4 |
container_start_page |
1019 |
op_container_end_page |
1034 |
_version_ |
1766177223069401088 |