Comparative Mitogenomic Analyses and New Insights into the Phylogeny of Thamnocephalidae (Branchiopoda: Anostraca)
Thamnocephalidae, a family of Anostraca which is widely distributed on all continents of the world except Antarctica, currently consists of six genera and approximately 63 recognized species. The relationships among genera in Thamnocephalidae and the monophyly of Thamnocephalidae, determined using m...
Published in: | Genes |
---|---|
Main Authors: | , |
Format: | Report |
Language: | English |
Published: |
MDPI
2022
|
Subjects: | |
Online Access: | http://ir.nigpas.ac.cn/handle/332004/41377 http://ir.nigpas.ac.cn/handle/332004/41378 https://doi.org/10.3390/genes13101765 |
id |
ftchinacscnigpas:oai:ir.nigpas.ac.cn:332004/41378 |
---|---|
record_format |
openpolar |
spelling |
ftchinacscnigpas:oai:ir.nigpas.ac.cn:332004/41378 2023-05-15T13:45:33+02:00 Comparative Mitogenomic Analyses and New Insights into the Phylogeny of Thamnocephalidae (Branchiopoda: Anostraca) Sun, Xiaoyan(孙晓燕) Cheng, Jinhui(陈金辉) 2022-10-01 http://ir.nigpas.ac.cn/handle/332004/41377 http://ir.nigpas.ac.cn/handle/332004/41378 https://doi.org/10.3390/genes13101765 英语 eng MDPI GENES http://ir.nigpas.ac.cn/handle/332004/41377 http://ir.nigpas.ac.cn/handle/332004/41378 doi:10.3390/genes13101765 Thamnocephalidae mitochondrial genome phylogeny non-monophyly of Branchinella COMPLETE MITOCHONDRIAL GENOME CENTRAL DISTRICT CLAM SHRIMP CRUSTACEA GENUS SPINICAUDATA FAMILIES PHYLOGEOGRAPHY MORPHOLOGY CHECKLIST Genetics & Heredity 期刊论文 2022 ftchinacscnigpas https://doi.org/10.3390/genes13101765 2022-12-09T01:13:29Z Thamnocephalidae, a family of Anostraca which is widely distributed on all continents of the world except Antarctica, currently consists of six genera and approximately 63 recognized species. The relationships among genera in Thamnocephalidae and the monophyly of Thamnocephalidae, determined using morphological characteristics or gene markers, remain controversial. In order to address the relationships within Thamnocephalidae, we sequenced Branchinella kugenumaensis mitogenomes and conducted a comparative analysis to reveal the divergence across mitogenomes of B. kugenumaensis. Using newly obtained mitogenomes together with available Anostracan genomic sequences, we present the most complete phylogenomic understanding of Anostraca to date. We observed high divergence across mitogenomes of B. kugenumaensis. Meanwhile, phylogenetic analyses based on both amino acids and nucleotides of the protein-coding genes (PCG) provide significant support for a non-monophyletic Thamnocephalidae within Anostraca, with Asian Branchinella more closely related to Streptocephalidae than Australian Branchinella. The phylogenetic relationships within Anostraca were recovered as follows: Branchinectidae + Chirocephalidae as the basal group of Anostraca and halophilic Artemiidae as a sister to the clade Thamnocephalidae + Streptocephalidae. Both Bayesian inference (BI)- and maximum likelihood (ML)-based analyses produced identical topologies. Report Antarc* Antarctica Nanjing Institute of Geology and Palaeontology: NIGPAS OpenIR (Chinese Academy of Sciences) Genes 13 10 1765 |
institution |
Open Polar |
collection |
Nanjing Institute of Geology and Palaeontology: NIGPAS OpenIR (Chinese Academy of Sciences) |
op_collection_id |
ftchinacscnigpas |
language |
English |
topic |
Thamnocephalidae mitochondrial genome phylogeny non-monophyly of Branchinella COMPLETE MITOCHONDRIAL GENOME CENTRAL DISTRICT CLAM SHRIMP CRUSTACEA GENUS SPINICAUDATA FAMILIES PHYLOGEOGRAPHY MORPHOLOGY CHECKLIST Genetics & Heredity |
spellingShingle |
Thamnocephalidae mitochondrial genome phylogeny non-monophyly of Branchinella COMPLETE MITOCHONDRIAL GENOME CENTRAL DISTRICT CLAM SHRIMP CRUSTACEA GENUS SPINICAUDATA FAMILIES PHYLOGEOGRAPHY MORPHOLOGY CHECKLIST Genetics & Heredity Sun, Xiaoyan(孙晓燕) Cheng, Jinhui(陈金辉) Comparative Mitogenomic Analyses and New Insights into the Phylogeny of Thamnocephalidae (Branchiopoda: Anostraca) |
topic_facet |
Thamnocephalidae mitochondrial genome phylogeny non-monophyly of Branchinella COMPLETE MITOCHONDRIAL GENOME CENTRAL DISTRICT CLAM SHRIMP CRUSTACEA GENUS SPINICAUDATA FAMILIES PHYLOGEOGRAPHY MORPHOLOGY CHECKLIST Genetics & Heredity |
description |
Thamnocephalidae, a family of Anostraca which is widely distributed on all continents of the world except Antarctica, currently consists of six genera and approximately 63 recognized species. The relationships among genera in Thamnocephalidae and the monophyly of Thamnocephalidae, determined using morphological characteristics or gene markers, remain controversial. In order to address the relationships within Thamnocephalidae, we sequenced Branchinella kugenumaensis mitogenomes and conducted a comparative analysis to reveal the divergence across mitogenomes of B. kugenumaensis. Using newly obtained mitogenomes together with available Anostracan genomic sequences, we present the most complete phylogenomic understanding of Anostraca to date. We observed high divergence across mitogenomes of B. kugenumaensis. Meanwhile, phylogenetic analyses based on both amino acids and nucleotides of the protein-coding genes (PCG) provide significant support for a non-monophyletic Thamnocephalidae within Anostraca, with Asian Branchinella more closely related to Streptocephalidae than Australian Branchinella. The phylogenetic relationships within Anostraca were recovered as follows: Branchinectidae + Chirocephalidae as the basal group of Anostraca and halophilic Artemiidae as a sister to the clade Thamnocephalidae + Streptocephalidae. Both Bayesian inference (BI)- and maximum likelihood (ML)-based analyses produced identical topologies. |
format |
Report |
author |
Sun, Xiaoyan(孙晓燕) Cheng, Jinhui(陈金辉) |
author_facet |
Sun, Xiaoyan(孙晓燕) Cheng, Jinhui(陈金辉) |
author_sort |
Sun, Xiaoyan(孙晓燕) |
title |
Comparative Mitogenomic Analyses and New Insights into the Phylogeny of Thamnocephalidae (Branchiopoda: Anostraca) |
title_short |
Comparative Mitogenomic Analyses and New Insights into the Phylogeny of Thamnocephalidae (Branchiopoda: Anostraca) |
title_full |
Comparative Mitogenomic Analyses and New Insights into the Phylogeny of Thamnocephalidae (Branchiopoda: Anostraca) |
title_fullStr |
Comparative Mitogenomic Analyses and New Insights into the Phylogeny of Thamnocephalidae (Branchiopoda: Anostraca) |
title_full_unstemmed |
Comparative Mitogenomic Analyses and New Insights into the Phylogeny of Thamnocephalidae (Branchiopoda: Anostraca) |
title_sort |
comparative mitogenomic analyses and new insights into the phylogeny of thamnocephalidae (branchiopoda: anostraca) |
publisher |
MDPI |
publishDate |
2022 |
url |
http://ir.nigpas.ac.cn/handle/332004/41377 http://ir.nigpas.ac.cn/handle/332004/41378 https://doi.org/10.3390/genes13101765 |
genre |
Antarc* Antarctica |
genre_facet |
Antarc* Antarctica |
op_relation |
GENES http://ir.nigpas.ac.cn/handle/332004/41377 http://ir.nigpas.ac.cn/handle/332004/41378 doi:10.3390/genes13101765 |
op_doi |
https://doi.org/10.3390/genes13101765 |
container_title |
Genes |
container_volume |
13 |
container_issue |
10 |
container_start_page |
1765 |
_version_ |
1766227295168626688 |