Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis
High-throughput sequencing was applied to compare the intestinal microbiota in largemouth bronze gudgeon either healthy or affected by furunculosis. Proteobacteria, Actinobacteria, Tenericutes, Firmicutes and Bacteroidetes were detected as the predominant bacterial phyla in the gut of both diseased...
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2016
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Online Access: | http://ir.ihb.ac.cn/handle/342005/34603 http://ir.ihb.ac.cn/handle/342005/34604 https://doi.org/10.1038/srep30606 |
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ftchinacadsciihb:oai:ir.ihb.ac.cn:342005/34604 2023-05-15T15:32:35+02:00 Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis Li, Tongtong Long, Meng Ji, Cheng Shen, Zhixin Gatesoupe, Francois-Joel Zhang, Xujie Zhang, Qianqian Zhang, Lanli Zhao, Yuanli Liu, Xinhua Li, Aihua 2016-07-28 http://ir.ihb.ac.cn/handle/342005/34603 http://ir.ihb.ac.cn/handle/342005/34604 https://doi.org/10.1038/srep30606 英语 eng NATURE PUBLISHING GROUP SCIENTIFIC REPORTS http://ir.ihb.ac.cn/handle/342005/34603 http://ir.ihb.ac.cn/handle/342005/34604 doi:10.1038/srep30606 Science & Technology - Other Topics Multidisciplinary Sciences ATYPICAL AEROMONAS-SALMONICIDA TROUT ONCORHYNCHUS-MYKISS GADUS-MORHUA L RAINBOW-TROUT GASTROINTESTINAL-TRACT INTESTINAL MICROFLORA BACTERIAL COMMUNITIES SUBSP SALMONICIDA ATLANTIC SALMON WATER FISH 期刊论文 2016 ftchinacadsciihb https://doi.org/10.1038/srep30606 2020-01-24T01:05:50Z High-throughput sequencing was applied to compare the intestinal microbiota in largemouth bronze gudgeon either healthy or affected by furunculosis. Proteobacteria, Actinobacteria, Tenericutes, Firmicutes and Bacteroidetes were detected as the predominant bacterial phyla in the gut of both diseased and healthy fish. The abundance of Proteobacteria differed significantly between the two groups of fish, mainly due to the overwhelming prevalence of Aeromonas in the diseased fish (81%+/- 17%), while the genus was unevenly spread among the apparently healthy fish (33%+/- 33%). The bacterial diversity in the intestine of diseased fish was markedly lower than in healthy fish. Analysis revealed the significant dissimilarity between the gut microbiota of diseased and healthy fish. The bacterial profiles in the gut were further characterized with the 28 phylotypes that were shared by the two groups. In diseased fish, two shared OTUs (OTU0001 and OTU0013) were closely related to Aeromonas salmonicida, their total proportion exceeding 70% of the sequences in diseased fish, while averaging 5.2%+/- 4.6% in the healthy fish. This result suggested the presence of healthy carriers of pathogenic A. salmonicida among the farmed fish, and the gut appeared as a probable infection source for furunculosis in largemouth bronze gudgeon. Report Atlantic salmon Gadus morhua Institute of Hydrobiology, Chinese Academy of Sciences: IHB OpenIR Scientific Reports 6 1 |
institution |
Open Polar |
collection |
Institute of Hydrobiology, Chinese Academy of Sciences: IHB OpenIR |
op_collection_id |
ftchinacadsciihb |
language |
English |
topic |
Science & Technology - Other Topics Multidisciplinary Sciences ATYPICAL AEROMONAS-SALMONICIDA TROUT ONCORHYNCHUS-MYKISS GADUS-MORHUA L RAINBOW-TROUT GASTROINTESTINAL-TRACT INTESTINAL MICROFLORA BACTERIAL COMMUNITIES SUBSP SALMONICIDA ATLANTIC SALMON WATER FISH |
spellingShingle |
Science & Technology - Other Topics Multidisciplinary Sciences ATYPICAL AEROMONAS-SALMONICIDA TROUT ONCORHYNCHUS-MYKISS GADUS-MORHUA L RAINBOW-TROUT GASTROINTESTINAL-TRACT INTESTINAL MICROFLORA BACTERIAL COMMUNITIES SUBSP SALMONICIDA ATLANTIC SALMON WATER FISH Li, Tongtong Long, Meng Ji, Cheng Shen, Zhixin Gatesoupe, Francois-Joel Zhang, Xujie Zhang, Qianqian Zhang, Lanli Zhao, Yuanli Liu, Xinhua Li, Aihua Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis |
topic_facet |
Science & Technology - Other Topics Multidisciplinary Sciences ATYPICAL AEROMONAS-SALMONICIDA TROUT ONCORHYNCHUS-MYKISS GADUS-MORHUA L RAINBOW-TROUT GASTROINTESTINAL-TRACT INTESTINAL MICROFLORA BACTERIAL COMMUNITIES SUBSP SALMONICIDA ATLANTIC SALMON WATER FISH |
description |
High-throughput sequencing was applied to compare the intestinal microbiota in largemouth bronze gudgeon either healthy or affected by furunculosis. Proteobacteria, Actinobacteria, Tenericutes, Firmicutes and Bacteroidetes were detected as the predominant bacterial phyla in the gut of both diseased and healthy fish. The abundance of Proteobacteria differed significantly between the two groups of fish, mainly due to the overwhelming prevalence of Aeromonas in the diseased fish (81%+/- 17%), while the genus was unevenly spread among the apparently healthy fish (33%+/- 33%). The bacterial diversity in the intestine of diseased fish was markedly lower than in healthy fish. Analysis revealed the significant dissimilarity between the gut microbiota of diseased and healthy fish. The bacterial profiles in the gut were further characterized with the 28 phylotypes that were shared by the two groups. In diseased fish, two shared OTUs (OTU0001 and OTU0013) were closely related to Aeromonas salmonicida, their total proportion exceeding 70% of the sequences in diseased fish, while averaging 5.2%+/- 4.6% in the healthy fish. This result suggested the presence of healthy carriers of pathogenic A. salmonicida among the farmed fish, and the gut appeared as a probable infection source for furunculosis in largemouth bronze gudgeon. |
format |
Report |
author |
Li, Tongtong Long, Meng Ji, Cheng Shen, Zhixin Gatesoupe, Francois-Joel Zhang, Xujie Zhang, Qianqian Zhang, Lanli Zhao, Yuanli Liu, Xinhua Li, Aihua |
author_facet |
Li, Tongtong Long, Meng Ji, Cheng Shen, Zhixin Gatesoupe, Francois-Joel Zhang, Xujie Zhang, Qianqian Zhang, Lanli Zhao, Yuanli Liu, Xinhua Li, Aihua |
author_sort |
Li, Tongtong |
title |
Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis |
title_short |
Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis |
title_full |
Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis |
title_fullStr |
Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis |
title_full_unstemmed |
Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis |
title_sort |
alterations of the gut microbiome of largemouth bronze gudgeon (coreius guichenoti) suffering from furunculosis |
publisher |
NATURE PUBLISHING GROUP |
publishDate |
2016 |
url |
http://ir.ihb.ac.cn/handle/342005/34603 http://ir.ihb.ac.cn/handle/342005/34604 https://doi.org/10.1038/srep30606 |
genre |
Atlantic salmon Gadus morhua |
genre_facet |
Atlantic salmon Gadus morhua |
op_relation |
SCIENTIFIC REPORTS http://ir.ihb.ac.cn/handle/342005/34603 http://ir.ihb.ac.cn/handle/342005/34604 doi:10.1038/srep30606 |
op_doi |
https://doi.org/10.1038/srep30606 |
container_title |
Scientific Reports |
container_volume |
6 |
container_issue |
1 |
_version_ |
1766363081520185344 |