Complete genome sequence of Planococcus faecalis AJ003T, the type species of the genus Planococcus and a microbial C30 carotenoid producer

A novel type strain, Planococcus faecalis AJ003T, isolated from the feces of Antarctic penguins, synthesizes a rare C30 carotenoid, glycosyl-4,4'-diaponeurosporen-4'-ol-4-oic acid. The complete genome of P. faecalis AJ003T comprises a single circular chromosome (3,495,892 bp; 40.9% G + C c...

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Bibliographic Details
Published in:Journal of Biotechnology
Main Authors: Kim, Jin Won, Choi, BoHyun, Kim, JinHo, Kang, Hyun-Jun, Ryu, Hoon, Lee, Pyung Cheon
Language:unknown
Published: 2018
Subjects:
Microbiology
Bioinformatics and Systems Biology
Carotenoids
Gene cluster
Planococcus faecalis
Complete genome sequence
Antarctic
Antarc*
Online Access:https://doi.org/10.1016/j.jbiotec.2017.12.005
https://research.chalmers.se/en/publication/541058
id ftchalmersuniv:oai:research.chalmers.se:541058
record_format openpolar
spelling ftchalmersuniv:oai:research.chalmers.se:541058 2024-06-09T07:40:27+00:00 Complete genome sequence of Planococcus faecalis AJ003T, the type species of the genus Planococcus and a microbial C30 carotenoid producer Kim, Jin Won Choi, BoHyun Kim, JinHo Kang, Hyun-Jun Ryu, Hoon Lee, Pyung Cheon 2018 text https://doi.org/10.1016/j.jbiotec.2017.12.005 https://research.chalmers.se/en/publication/541058 unknown http://dx.doi.org/10.1016/j.jbiotec.2017.12.005 https://research.chalmers.se/en/publication/541058 Microbiology Bioinformatics and Systems Biology Carotenoids Gene cluster Planococcus faecalis Complete genome sequence 2018 ftchalmersuniv https://doi.org/10.1016/j.jbiotec.2017.12.005 2024-05-14T23:36:10Z A novel type strain, Planococcus faecalis AJ003T, isolated from the feces of Antarctic penguins, synthesizes a rare C30 carotenoid, glycosyl-4,4'-diaponeurosporen-4'-ol-4-oic acid. The complete genome of P. faecalis AJ003T comprises a single circular chromosome (3,495,892 bp; 40.9% G + C content). Annotation analysis has revealed 3511 coding DNA sequences and 99 RNAs; seven genes associated with the MEP pathway and five genes involved in the carotenoid pathway have been identified. The functionality and complementation of 4,4'-diapophytoene synthase (CrtM) and two copies of heterologous 4,4'-diapophytoene desaturase (CrtN) involved in carotenoid biosynthesis were analyzed in Escherichia coli. Other/Unknown Material Antarc* Antarctic Chalmers University of Technology: Chalmers research Antarctic Journal of Biotechnology 266 72 76
institution Open Polar
collection Chalmers University of Technology: Chalmers research
op_collection_id ftchalmersuniv
language unknown
topic Microbiology
Bioinformatics and Systems Biology
Carotenoids
Gene cluster
Planococcus faecalis
Complete genome sequence
spellingShingle Microbiology
Bioinformatics and Systems Biology
Carotenoids
Gene cluster
Planococcus faecalis
Complete genome sequence
Kim, Jin Won
Choi, BoHyun
Kim, JinHo
Kang, Hyun-Jun
Ryu, Hoon
Lee, Pyung Cheon
Complete genome sequence of Planococcus faecalis AJ003T, the type species of the genus Planococcus and a microbial C30 carotenoid producer
topic_facet Microbiology
Bioinformatics and Systems Biology
Carotenoids
Gene cluster
Planococcus faecalis
Complete genome sequence
description A novel type strain, Planococcus faecalis AJ003T, isolated from the feces of Antarctic penguins, synthesizes a rare C30 carotenoid, glycosyl-4,4'-diaponeurosporen-4'-ol-4-oic acid. The complete genome of P. faecalis AJ003T comprises a single circular chromosome (3,495,892 bp; 40.9% G + C content). Annotation analysis has revealed 3511 coding DNA sequences and 99 RNAs; seven genes associated with the MEP pathway and five genes involved in the carotenoid pathway have been identified. The functionality and complementation of 4,4'-diapophytoene synthase (CrtM) and two copies of heterologous 4,4'-diapophytoene desaturase (CrtN) involved in carotenoid biosynthesis were analyzed in Escherichia coli.
author Kim, Jin Won
Choi, BoHyun
Kim, JinHo
Kang, Hyun-Jun
Ryu, Hoon
Lee, Pyung Cheon
author_facet Kim, Jin Won
Choi, BoHyun
Kim, JinHo
Kang, Hyun-Jun
Ryu, Hoon
Lee, Pyung Cheon
author_sort Kim, Jin Won
title Complete genome sequence of Planococcus faecalis AJ003T, the type species of the genus Planococcus and a microbial C30 carotenoid producer
title_short Complete genome sequence of Planococcus faecalis AJ003T, the type species of the genus Planococcus and a microbial C30 carotenoid producer
title_full Complete genome sequence of Planococcus faecalis AJ003T, the type species of the genus Planococcus and a microbial C30 carotenoid producer
title_fullStr Complete genome sequence of Planococcus faecalis AJ003T, the type species of the genus Planococcus and a microbial C30 carotenoid producer
title_full_unstemmed Complete genome sequence of Planococcus faecalis AJ003T, the type species of the genus Planococcus and a microbial C30 carotenoid producer
title_sort complete genome sequence of planococcus faecalis aj003t, the type species of the genus planococcus and a microbial c30 carotenoid producer
publishDate 2018
url https://doi.org/10.1016/j.jbiotec.2017.12.005
https://research.chalmers.se/en/publication/541058
geographic Antarctic
geographic_facet Antarctic
genre Antarc*
Antarctic
genre_facet Antarc*
Antarctic
op_relation http://dx.doi.org/10.1016/j.jbiotec.2017.12.005
https://research.chalmers.se/en/publication/541058
op_doi https://doi.org/10.1016/j.jbiotec.2017.12.005
container_title Journal of Biotechnology
container_volume 266
container_start_page 72
op_container_end_page 76
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