Marine DNA Viral Macro- and Microdiversity from Pole to Pole.
Microbes drive most ecosystems and are modulated by viruses that impact their lifespan, gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community diversity remain difficult to assess due to classification issues and few reference genomes. Here, we establish an ∼12-fold ex...
Published in: | Cell |
---|---|
Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
eScholarship, University of California
2019
|
Subjects: | |
Online Access: | http://www.escholarship.org/uc/item/77m8k1md |
id |
ftcdlib:qt77m8k1md |
---|---|
record_format |
openpolar |
spelling |
ftcdlib:qt77m8k1md 2023-05-15T14:50:56+02:00 Marine DNA Viral Macro- and Microdiversity from Pole to Pole. Gregory, Ann C Zayed, Ahmed A Conceição-Neto, Nádia Temperton, Ben Bolduc, Ben Alberti, Adriana Ardyna, Mathieu Arkhipova, Ksenia Carmichael, Margaux Cruaud, Corinne Dimier, Céline Domínguez-Huerta, Guillermo Ferland, Joannie Kandels, Stefanie Liu, Yunxiao Marec, Claudie Pesant, Stéphane Picheral, Marc Pisarev, Sergey Poulain, Julie Tremblay, Jean-Éric Vik, Dean Tara Oceans Coordinators, Babin, Marcel Bowler, Chris Culley, Alexander I de Vargas, Colomban Dutilh, Bas E Iudicone, Daniele Karp-Boss, Lee Roux, Simon Sunagawa, Shinichi Wincker, Patrick Sullivan, Matthew B 1109 - 1123.e14 2019-05-01 application/pdf http://www.escholarship.org/uc/item/77m8k1md english eng eScholarship, University of California qt77m8k1md http://www.escholarship.org/uc/item/77m8k1md public Gregory, Ann C; Zayed, Ahmed A; Conceição-Neto, Nádia; Temperton, Ben; Bolduc, Ben; Alberti, Adriana; et al.(2019). Marine DNA Viral Macro- and Microdiversity from Pole to Pole. Cell, 177(5), 1109 - 1123.e14. doi:10.1016/j.cell.2019.03.040. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/77m8k1md Tara Oceans Coordinators community ecology diversity gradients marine biology metagenomics population ecology species viruses Biological Sciences Medical and Health Sciences Developmental Biology article 2019 ftcdlib https://doi.org/10.1016/j.cell.2019.03.040 2019-06-14T22:52:23Z Microbes drive most ecosystems and are modulated by viruses that impact their lifespan, gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community diversity remain difficult to assess due to classification issues and few reference genomes. Here, we establish an ∼12-fold expanded global ocean DNA virome dataset of 195,728 viral populations, now including the Arctic Ocean, and validate that these populations form discrete genotypic clusters. Meta-community analyses revealed five ecological zones throughout the global ocean, including two distinct Arctic regions. Across the zones, local and global patterns and drivers in viral community diversity were established for both macrodiversity (inter-population diversity) and microdiversity (intra-population genetic variation). These patterns sometimes, but not always, paralleled those from macro-organisms and revealed temperate and tropical surface waters and the Arctic as biodiversity hotspots and mechanistic hypotheses to explain them. Such further understanding of ocean viruses is critical for broader inclusion in ecosystem models. Article in Journal/Newspaper Arctic Arctic Ocean University of California: eScholarship Arctic Arctic Ocean Cell 177 5 1109 1123.e14 |
institution |
Open Polar |
collection |
University of California: eScholarship |
op_collection_id |
ftcdlib |
language |
English |
topic |
Tara Oceans Coordinators community ecology diversity gradients marine biology metagenomics population ecology species viruses Biological Sciences Medical and Health Sciences Developmental Biology |
spellingShingle |
Tara Oceans Coordinators community ecology diversity gradients marine biology metagenomics population ecology species viruses Biological Sciences Medical and Health Sciences Developmental Biology Gregory, Ann C Zayed, Ahmed A Conceição-Neto, Nádia Temperton, Ben Bolduc, Ben Alberti, Adriana Ardyna, Mathieu Arkhipova, Ksenia Carmichael, Margaux Cruaud, Corinne Dimier, Céline Domínguez-Huerta, Guillermo Ferland, Joannie Kandels, Stefanie Liu, Yunxiao Marec, Claudie Pesant, Stéphane Picheral, Marc Pisarev, Sergey Poulain, Julie Tremblay, Jean-Éric Vik, Dean Tara Oceans Coordinators, Babin, Marcel Bowler, Chris Culley, Alexander I de Vargas, Colomban Dutilh, Bas E Iudicone, Daniele Karp-Boss, Lee Roux, Simon Sunagawa, Shinichi Wincker, Patrick Sullivan, Matthew B Marine DNA Viral Macro- and Microdiversity from Pole to Pole. |
topic_facet |
Tara Oceans Coordinators community ecology diversity gradients marine biology metagenomics population ecology species viruses Biological Sciences Medical and Health Sciences Developmental Biology |
description |
Microbes drive most ecosystems and are modulated by viruses that impact their lifespan, gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community diversity remain difficult to assess due to classification issues and few reference genomes. Here, we establish an ∼12-fold expanded global ocean DNA virome dataset of 195,728 viral populations, now including the Arctic Ocean, and validate that these populations form discrete genotypic clusters. Meta-community analyses revealed five ecological zones throughout the global ocean, including two distinct Arctic regions. Across the zones, local and global patterns and drivers in viral community diversity were established for both macrodiversity (inter-population diversity) and microdiversity (intra-population genetic variation). These patterns sometimes, but not always, paralleled those from macro-organisms and revealed temperate and tropical surface waters and the Arctic as biodiversity hotspots and mechanistic hypotheses to explain them. Such further understanding of ocean viruses is critical for broader inclusion in ecosystem models. |
format |
Article in Journal/Newspaper |
author |
Gregory, Ann C Zayed, Ahmed A Conceição-Neto, Nádia Temperton, Ben Bolduc, Ben Alberti, Adriana Ardyna, Mathieu Arkhipova, Ksenia Carmichael, Margaux Cruaud, Corinne Dimier, Céline Domínguez-Huerta, Guillermo Ferland, Joannie Kandels, Stefanie Liu, Yunxiao Marec, Claudie Pesant, Stéphane Picheral, Marc Pisarev, Sergey Poulain, Julie Tremblay, Jean-Éric Vik, Dean Tara Oceans Coordinators, Babin, Marcel Bowler, Chris Culley, Alexander I de Vargas, Colomban Dutilh, Bas E Iudicone, Daniele Karp-Boss, Lee Roux, Simon Sunagawa, Shinichi Wincker, Patrick Sullivan, Matthew B |
author_facet |
Gregory, Ann C Zayed, Ahmed A Conceição-Neto, Nádia Temperton, Ben Bolduc, Ben Alberti, Adriana Ardyna, Mathieu Arkhipova, Ksenia Carmichael, Margaux Cruaud, Corinne Dimier, Céline Domínguez-Huerta, Guillermo Ferland, Joannie Kandels, Stefanie Liu, Yunxiao Marec, Claudie Pesant, Stéphane Picheral, Marc Pisarev, Sergey Poulain, Julie Tremblay, Jean-Éric Vik, Dean Tara Oceans Coordinators, Babin, Marcel Bowler, Chris Culley, Alexander I de Vargas, Colomban Dutilh, Bas E Iudicone, Daniele Karp-Boss, Lee Roux, Simon Sunagawa, Shinichi Wincker, Patrick Sullivan, Matthew B |
author_sort |
Gregory, Ann C |
title |
Marine DNA Viral Macro- and Microdiversity from Pole to Pole. |
title_short |
Marine DNA Viral Macro- and Microdiversity from Pole to Pole. |
title_full |
Marine DNA Viral Macro- and Microdiversity from Pole to Pole. |
title_fullStr |
Marine DNA Viral Macro- and Microdiversity from Pole to Pole. |
title_full_unstemmed |
Marine DNA Viral Macro- and Microdiversity from Pole to Pole. |
title_sort |
marine dna viral macro- and microdiversity from pole to pole. |
publisher |
eScholarship, University of California |
publishDate |
2019 |
url |
http://www.escholarship.org/uc/item/77m8k1md |
op_coverage |
1109 - 1123.e14 |
geographic |
Arctic Arctic Ocean |
geographic_facet |
Arctic Arctic Ocean |
genre |
Arctic Arctic Ocean |
genre_facet |
Arctic Arctic Ocean |
op_source |
Gregory, Ann C; Zayed, Ahmed A; Conceição-Neto, Nádia; Temperton, Ben; Bolduc, Ben; Alberti, Adriana; et al.(2019). Marine DNA Viral Macro- and Microdiversity from Pole to Pole. Cell, 177(5), 1109 - 1123.e14. doi:10.1016/j.cell.2019.03.040. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/77m8k1md |
op_relation |
qt77m8k1md http://www.escholarship.org/uc/item/77m8k1md |
op_rights |
public |
op_doi |
https://doi.org/10.1016/j.cell.2019.03.040 |
container_title |
Cell |
container_volume |
177 |
container_issue |
5 |
container_start_page |
1109 |
op_container_end_page |
1123.e14 |
_version_ |
1766321987122102272 |