Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
© 2016 Susanti et al. This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy so...
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ftcdlib:qt6k03k5rt 2023-05-15T16:47:36+02:00 Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland Susanti, D Johnson, EF Lapidus, A Han, J Reddy, TBK Pilay, M Ivanova, NN Markowitz, VM Woyke, T Kyrpides, NC Mukhopadhyay, B 2016-01-13 application/pdf http://www.escholarship.org/uc/item/6k03k5rt english eng eScholarship, University of California qt6k03k5rt http://www.escholarship.org/uc/item/6k03k5rt public Susanti, D; Johnson, EF; Lapidus, A; Han, J; Reddy, TBK; Pilay, M; et al.(2016). Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland. Standards in Genomic Sciences, 11(1). doi:10.1186/s40793-015-0128-4. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/6k03k5rt article 2016 ftcdlib https://doi.org/10.1186/s40793-015-0128-4 2018-07-13T22:56:10Z © 2016 Susanti et al. This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H2S. A metabolic construction derived from the draft genome identified putative pathways for peptide degradation and sulfur respiration in this archaeon. Existence of several hydrogenase genes in the genome supported previous findings that H2is produced during the growth of D. mobilis in the absence of sulfur. Interestingly, genes encoding glucose transport and utilization systems also exist in the D. mobilis genome though this archaeon does not utilize carbohydrate for growth. The draft genome of D. mobilis provides an additional mean for comparative genomic analysis of desulfurococci. In addition, our analysis on the Average Nucleotide Identity between D. mobilis and Desulfurococcus mucosus suggested that these two desulfurococci are two different strains of the same species. Article in Journal/Newspaper Iceland University of California: eScholarship Hveravellir ENVELOPE(-19.546,-19.546,64.867,64.867) Standards in Genomic Sciences 11 1 |
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Open Polar |
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University of California: eScholarship |
op_collection_id |
ftcdlib |
language |
English |
description |
© 2016 Susanti et al. This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H2S. A metabolic construction derived from the draft genome identified putative pathways for peptide degradation and sulfur respiration in this archaeon. Existence of several hydrogenase genes in the genome supported previous findings that H2is produced during the growth of D. mobilis in the absence of sulfur. Interestingly, genes encoding glucose transport and utilization systems also exist in the D. mobilis genome though this archaeon does not utilize carbohydrate for growth. The draft genome of D. mobilis provides an additional mean for comparative genomic analysis of desulfurococci. In addition, our analysis on the Average Nucleotide Identity between D. mobilis and Desulfurococcus mucosus suggested that these two desulfurococci are two different strains of the same species. |
format |
Article in Journal/Newspaper |
author |
Susanti, D Johnson, EF Lapidus, A Han, J Reddy, TBK Pilay, M Ivanova, NN Markowitz, VM Woyke, T Kyrpides, NC Mukhopadhyay, B |
spellingShingle |
Susanti, D Johnson, EF Lapidus, A Han, J Reddy, TBK Pilay, M Ivanova, NN Markowitz, VM Woyke, T Kyrpides, NC Mukhopadhyay, B Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
author_facet |
Susanti, D Johnson, EF Lapidus, A Han, J Reddy, TBK Pilay, M Ivanova, NN Markowitz, VM Woyke, T Kyrpides, NC Mukhopadhyay, B |
author_sort |
Susanti, D |
title |
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
title_short |
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
title_full |
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
title_fullStr |
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
title_full_unstemmed |
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
title_sort |
permanent draft genome sequence of desulfurococcus mobilis type strain dsm 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of hveravellir, iceland |
publisher |
eScholarship, University of California |
publishDate |
2016 |
url |
http://www.escholarship.org/uc/item/6k03k5rt |
long_lat |
ENVELOPE(-19.546,-19.546,64.867,64.867) |
geographic |
Hveravellir |
geographic_facet |
Hveravellir |
genre |
Iceland |
genre_facet |
Iceland |
op_source |
Susanti, D; Johnson, EF; Lapidus, A; Han, J; Reddy, TBK; Pilay, M; et al.(2016). Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland. Standards in Genomic Sciences, 11(1). doi:10.1186/s40793-015-0128-4. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/6k03k5rt |
op_relation |
qt6k03k5rt http://www.escholarship.org/uc/item/6k03k5rt |
op_rights |
public |
op_doi |
https://doi.org/10.1186/s40793-015-0128-4 |
container_title |
Standards in Genomic Sciences |
container_volume |
11 |
container_issue |
1 |
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1766037695478366208 |