Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein
The amyloid β-protein (Aβ), which is present predominately as a 40- or 42-residue peptide, is postulated to play a seminal role in the pathogenesis of Alzheimer's disease (AD). Folding of the Aβ21-30 decapeptide region is a critical step in the aggregation of Aβ. We report results of constant t...
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Language: | English |
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ftcdlib:qt0jg6p377 2023-05-15T14:54:20+02:00 Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein Cruz, L Rao, JS Teplow, DB Urbanc, B 6311 - 6325 2012-06-07 application/pdf http://www.escholarship.org/uc/item/0jg6p377 english eng eScholarship, University of California qt0jg6p377 http://www.escholarship.org/uc/item/0jg6p377 public Cruz, L; Rao, JS; Teplow, DB; & Urbanc, B. (2012). Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein. Journal of Physical Chemistry B, 116(22), 6311 - 6325. doi:10.1021/jp301619v. UCLA: Retrieved from: http://www.escholarship.org/uc/item/0jg6p377 article 2012 ftcdlib https://doi.org/10.1021/jp301619v 2018-07-06T22:52:01Z The amyloid β-protein (Aβ), which is present predominately as a 40- or 42-residue peptide, is postulated to play a seminal role in the pathogenesis of Alzheimer's disease (AD). Folding of the Aβ21-30 decapeptide region is a critical step in the aggregation of Aβ. We report results of constant temperature all-atom molecular dynamics simulations in explicit water of the dynamics of monomeric Aβ21-30 and its Dutch [Glu22Gln], Arctic [Glu22Gly], and Iowa [Asp23Asn] isoforms that are associated with familial forms of cerebral amyloid angiopathy and AD. The simulations revealed a variety of loop conformers that exhibited a hydrogen bond network involving the Asp23 and Ser26 amino acids. A population of conformers, not part of the loop population, was found to form metastable β-hairpin structures with the highest probability in the Iowa mutant. At least three β-hairpin structures were found that differed in their hydrogen bonding register, average number of backbone hydrogen bonds, and lifetimes. Analysis revealed that the Dutch mutant had the longest β-hairpin lifetime (≥500 ns), closely followed by the Iowa mutant (≈500 ns). Aβ21-30 and the Arctic mutant had significantly lower lifetimes (≈200 ns). Hydrophobic packing of side chains was responsible for enhanced β-hairpin lifetimes in the Dutch and Iowa mutants, whereas lifetimes in Aβ21-30 and its Arctic mutant were influenced by the backbone hydrogen bonding. The data suggest that prolonged β-hairpin lifetimes may impact peptide pathogenicity in vivo. © 2012 American Chemical Society. Article in Journal/Newspaper Arctic University of California: eScholarship Arctic The Journal of Physical Chemistry B 116 22 6311 6325 |
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University of California: eScholarship |
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ftcdlib |
language |
English |
description |
The amyloid β-protein (Aβ), which is present predominately as a 40- or 42-residue peptide, is postulated to play a seminal role in the pathogenesis of Alzheimer's disease (AD). Folding of the Aβ21-30 decapeptide region is a critical step in the aggregation of Aβ. We report results of constant temperature all-atom molecular dynamics simulations in explicit water of the dynamics of monomeric Aβ21-30 and its Dutch [Glu22Gln], Arctic [Glu22Gly], and Iowa [Asp23Asn] isoforms that are associated with familial forms of cerebral amyloid angiopathy and AD. The simulations revealed a variety of loop conformers that exhibited a hydrogen bond network involving the Asp23 and Ser26 amino acids. A population of conformers, not part of the loop population, was found to form metastable β-hairpin structures with the highest probability in the Iowa mutant. At least three β-hairpin structures were found that differed in their hydrogen bonding register, average number of backbone hydrogen bonds, and lifetimes. Analysis revealed that the Dutch mutant had the longest β-hairpin lifetime (≥500 ns), closely followed by the Iowa mutant (≈500 ns). Aβ21-30 and the Arctic mutant had significantly lower lifetimes (≈200 ns). Hydrophobic packing of side chains was responsible for enhanced β-hairpin lifetimes in the Dutch and Iowa mutants, whereas lifetimes in Aβ21-30 and its Arctic mutant were influenced by the backbone hydrogen bonding. The data suggest that prolonged β-hairpin lifetimes may impact peptide pathogenicity in vivo. © 2012 American Chemical Society. |
format |
Article in Journal/Newspaper |
author |
Cruz, L Rao, JS Teplow, DB Urbanc, B |
spellingShingle |
Cruz, L Rao, JS Teplow, DB Urbanc, B Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein |
author_facet |
Cruz, L Rao, JS Teplow, DB Urbanc, B |
author_sort |
Cruz, L |
title |
Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein |
title_short |
Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein |
title_full |
Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein |
title_fullStr |
Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein |
title_full_unstemmed |
Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein |
title_sort |
dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein |
publisher |
eScholarship, University of California |
publishDate |
2012 |
url |
http://www.escholarship.org/uc/item/0jg6p377 |
op_coverage |
6311 - 6325 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic |
genre_facet |
Arctic |
op_source |
Cruz, L; Rao, JS; Teplow, DB; & Urbanc, B. (2012). Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein. Journal of Physical Chemistry B, 116(22), 6311 - 6325. doi:10.1021/jp301619v. UCLA: Retrieved from: http://www.escholarship.org/uc/item/0jg6p377 |
op_relation |
qt0jg6p377 http://www.escholarship.org/uc/item/0jg6p377 |
op_rights |
public |
op_doi |
https://doi.org/10.1021/jp301619v |
container_title |
The Journal of Physical Chemistry B |
container_volume |
116 |
container_issue |
22 |
container_start_page |
6311 |
op_container_end_page |
6325 |
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1766326055425015808 |