Using ancient DNA and coalescent-based methods to infer extinction.
DNA sequences extracted from preserved remains can add considerable resolution to inference of past population dynamics. For example, coalescent-based methods have been used to correlate declines in some arctic megafauna populations with habitat fragmentation during the last ice age. These methods,...
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ftcdlib:oai:escholarship.org:ark:/13030/qt8zr128qq 2023-06-11T04:09:24+02:00 Using ancient DNA and coalescent-based methods to infer extinction. Chang, Dan Shapiro, Beth 20150822 2016-02-01 application/pdf https://escholarship.org/uc/item/8zr128qq unknown eScholarship, University of California qt8zr128qq https://escholarship.org/uc/item/8zr128qq public Biology letters, vol 12, iss 2 Animals Vertebrates Invertebrates Plants DNA Conservation of Natural Resources Population Dynamics Genome Fossils Extinction Biological ancient DNA coalescent demography megafauna Human Genome Genetics Generic health relevance Life on Land Biological Sciences Evolutionary Biology article 2016 ftcdlib 2023-05-08T17:56:41Z DNA sequences extracted from preserved remains can add considerable resolution to inference of past population dynamics. For example, coalescent-based methods have been used to correlate declines in some arctic megafauna populations with habitat fragmentation during the last ice age. These methods, however, often fail to detect population declines preceding extinction, most likely owing to a combination of sparse sampling, uninformative genetic markers, and models that cannot account for the increasingly structured nature of populations as habitats decline. As ancient DNA research expands to include full-genome analyses, these data will provide greater resolution of the genomic consequences of environmental change and the genetic signatures of extinction. Article in Journal/Newspaper Arctic University of California: eScholarship Arctic |
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Open Polar |
collection |
University of California: eScholarship |
op_collection_id |
ftcdlib |
language |
unknown |
topic |
Animals Vertebrates Invertebrates Plants DNA Conservation of Natural Resources Population Dynamics Genome Fossils Extinction Biological ancient DNA coalescent demography megafauna Human Genome Genetics Generic health relevance Life on Land Biological Sciences Evolutionary Biology |
spellingShingle |
Animals Vertebrates Invertebrates Plants DNA Conservation of Natural Resources Population Dynamics Genome Fossils Extinction Biological ancient DNA coalescent demography megafauna Human Genome Genetics Generic health relevance Life on Land Biological Sciences Evolutionary Biology Chang, Dan Shapiro, Beth Using ancient DNA and coalescent-based methods to infer extinction. |
topic_facet |
Animals Vertebrates Invertebrates Plants DNA Conservation of Natural Resources Population Dynamics Genome Fossils Extinction Biological ancient DNA coalescent demography megafauna Human Genome Genetics Generic health relevance Life on Land Biological Sciences Evolutionary Biology |
description |
DNA sequences extracted from preserved remains can add considerable resolution to inference of past population dynamics. For example, coalescent-based methods have been used to correlate declines in some arctic megafauna populations with habitat fragmentation during the last ice age. These methods, however, often fail to detect population declines preceding extinction, most likely owing to a combination of sparse sampling, uninformative genetic markers, and models that cannot account for the increasingly structured nature of populations as habitats decline. As ancient DNA research expands to include full-genome analyses, these data will provide greater resolution of the genomic consequences of environmental change and the genetic signatures of extinction. |
format |
Article in Journal/Newspaper |
author |
Chang, Dan Shapiro, Beth |
author_facet |
Chang, Dan Shapiro, Beth |
author_sort |
Chang, Dan |
title |
Using ancient DNA and coalescent-based methods to infer extinction. |
title_short |
Using ancient DNA and coalescent-based methods to infer extinction. |
title_full |
Using ancient DNA and coalescent-based methods to infer extinction. |
title_fullStr |
Using ancient DNA and coalescent-based methods to infer extinction. |
title_full_unstemmed |
Using ancient DNA and coalescent-based methods to infer extinction. |
title_sort |
using ancient dna and coalescent-based methods to infer extinction. |
publisher |
eScholarship, University of California |
publishDate |
2016 |
url |
https://escholarship.org/uc/item/8zr128qq |
op_coverage |
20150822 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic |
genre_facet |
Arctic |
op_source |
Biology letters, vol 12, iss 2 |
op_relation |
qt8zr128qq https://escholarship.org/uc/item/8zr128qq |
op_rights |
public |
_version_ |
1768383224892882944 |