Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elem...
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2016
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ftcdlib:oai:escholarship.org:ark:/13030/qt6k03k5rt 2024-01-14T10:07:54+01:00 Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland Susanti, Dwi Johnson, Eric F Lapidus, Alla Han, James Reddy, TBK Pilay, Manoj Ivanova, Natalia N Markowitz, Victor M Woyke, Tanja Kyrpides, Nikos C Mukhopadhyay, Biswarup 3 2016-12-01 application/pdf https://escholarship.org/uc/item/6k03k5rt unknown eScholarship, University of California qt6k03k5rt https://escholarship.org/uc/item/6k03k5rt public Environmental Microbiome, vol 11, iss 1 Microbiology Biological Sciences Genetics Human Genome Affordable and Clean Energy Desulfurococcus Sulfur-reducing crenarchaeon Thermophile Acidic hot spring Biochemistry and Cell Biology article 2016 ftcdlib 2023-12-18T19:08:43Z This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H2S. A metabolic construction derived from the draft genome identified putative pathways for peptide degradation and sulfur respiration in this archaeon. Existence of several hydrogenase genes in the genome supported previous findings that H2 is produced during the growth of D. mobilis in the absence of sulfur. Interestingly, genes encoding glucose transport and utilization systems also exist in the D. mobilis genome though this archaeon does not utilize carbohydrate for growth. The draft genome of D. mobilis provides an additional mean for comparative genomic analysis of desulfurococci. In addition, our analysis on the Average Nucleotide Identity between D. mobilis and Desulfurococcus mucosus suggested that these two desulfurococci are two different strains of the same species. Article in Journal/Newspaper Iceland University of California: eScholarship Hveravellir ENVELOPE(-19.546,-19.546,64.867,64.867) |
institution |
Open Polar |
collection |
University of California: eScholarship |
op_collection_id |
ftcdlib |
language |
unknown |
topic |
Microbiology Biological Sciences Genetics Human Genome Affordable and Clean Energy Desulfurococcus Sulfur-reducing crenarchaeon Thermophile Acidic hot spring Biochemistry and Cell Biology |
spellingShingle |
Microbiology Biological Sciences Genetics Human Genome Affordable and Clean Energy Desulfurococcus Sulfur-reducing crenarchaeon Thermophile Acidic hot spring Biochemistry and Cell Biology Susanti, Dwi Johnson, Eric F Lapidus, Alla Han, James Reddy, TBK Pilay, Manoj Ivanova, Natalia N Markowitz, Victor M Woyke, Tanja Kyrpides, Nikos C Mukhopadhyay, Biswarup Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
topic_facet |
Microbiology Biological Sciences Genetics Human Genome Affordable and Clean Energy Desulfurococcus Sulfur-reducing crenarchaeon Thermophile Acidic hot spring Biochemistry and Cell Biology |
description |
This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H2S. A metabolic construction derived from the draft genome identified putative pathways for peptide degradation and sulfur respiration in this archaeon. Existence of several hydrogenase genes in the genome supported previous findings that H2 is produced during the growth of D. mobilis in the absence of sulfur. Interestingly, genes encoding glucose transport and utilization systems also exist in the D. mobilis genome though this archaeon does not utilize carbohydrate for growth. The draft genome of D. mobilis provides an additional mean for comparative genomic analysis of desulfurococci. In addition, our analysis on the Average Nucleotide Identity between D. mobilis and Desulfurococcus mucosus suggested that these two desulfurococci are two different strains of the same species. |
format |
Article in Journal/Newspaper |
author |
Susanti, Dwi Johnson, Eric F Lapidus, Alla Han, James Reddy, TBK Pilay, Manoj Ivanova, Natalia N Markowitz, Victor M Woyke, Tanja Kyrpides, Nikos C Mukhopadhyay, Biswarup |
author_facet |
Susanti, Dwi Johnson, Eric F Lapidus, Alla Han, James Reddy, TBK Pilay, Manoj Ivanova, Natalia N Markowitz, Victor M Woyke, Tanja Kyrpides, Nikos C Mukhopadhyay, Biswarup |
author_sort |
Susanti, Dwi |
title |
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
title_short |
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
title_full |
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
title_fullStr |
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
title_full_unstemmed |
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland |
title_sort |
permanent draft genome sequence of desulfurococcus mobilis type strain dsm 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of hveravellir, iceland |
publisher |
eScholarship, University of California |
publishDate |
2016 |
url |
https://escholarship.org/uc/item/6k03k5rt |
op_coverage |
3 |
long_lat |
ENVELOPE(-19.546,-19.546,64.867,64.867) |
geographic |
Hveravellir |
geographic_facet |
Hveravellir |
genre |
Iceland |
genre_facet |
Iceland |
op_source |
Environmental Microbiome, vol 11, iss 1 |
op_relation |
qt6k03k5rt https://escholarship.org/uc/item/6k03k5rt |
op_rights |
public |
_version_ |
1788062303046860800 |