Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland

This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elem...

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Main Authors: Susanti, Dwi, Johnson, Eric F, Lapidus, Alla, Han, James, Reddy, TBK, Pilay, Manoj, Ivanova, Natalia N, Markowitz, Victor M, Woyke, Tanja, Kyrpides, Nikos C, Mukhopadhyay, Biswarup
Format: Article in Journal/Newspaper
Language:unknown
Published: eScholarship, University of California 2016
Subjects:
Online Access:https://escholarship.org/uc/item/6k03k5rt
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spelling ftcdlib:oai:escholarship.org:ark:/13030/qt6k03k5rt 2024-01-14T10:07:54+01:00 Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland Susanti, Dwi Johnson, Eric F Lapidus, Alla Han, James Reddy, TBK Pilay, Manoj Ivanova, Natalia N Markowitz, Victor M Woyke, Tanja Kyrpides, Nikos C Mukhopadhyay, Biswarup 3 2016-12-01 application/pdf https://escholarship.org/uc/item/6k03k5rt unknown eScholarship, University of California qt6k03k5rt https://escholarship.org/uc/item/6k03k5rt public Environmental Microbiome, vol 11, iss 1 Microbiology Biological Sciences Genetics Human Genome Affordable and Clean Energy Desulfurococcus Sulfur-reducing crenarchaeon Thermophile Acidic hot spring Biochemistry and Cell Biology article 2016 ftcdlib 2023-12-18T19:08:43Z This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H2S. A metabolic construction derived from the draft genome identified putative pathways for peptide degradation and sulfur respiration in this archaeon. Existence of several hydrogenase genes in the genome supported previous findings that H2 is produced during the growth of D. mobilis in the absence of sulfur. Interestingly, genes encoding glucose transport and utilization systems also exist in the D. mobilis genome though this archaeon does not utilize carbohydrate for growth. The draft genome of D. mobilis provides an additional mean for comparative genomic analysis of desulfurococci. In addition, our analysis on the Average Nucleotide Identity between D. mobilis and Desulfurococcus mucosus suggested that these two desulfurococci are two different strains of the same species. Article in Journal/Newspaper Iceland University of California: eScholarship Hveravellir ENVELOPE(-19.546,-19.546,64.867,64.867)
institution Open Polar
collection University of California: eScholarship
op_collection_id ftcdlib
language unknown
topic Microbiology
Biological Sciences
Genetics
Human Genome
Affordable and Clean Energy
Desulfurococcus
Sulfur-reducing crenarchaeon
Thermophile
Acidic hot spring
Biochemistry and Cell Biology
spellingShingle Microbiology
Biological Sciences
Genetics
Human Genome
Affordable and Clean Energy
Desulfurococcus
Sulfur-reducing crenarchaeon
Thermophile
Acidic hot spring
Biochemistry and Cell Biology
Susanti, Dwi
Johnson, Eric F
Lapidus, Alla
Han, James
Reddy, TBK
Pilay, Manoj
Ivanova, Natalia N
Markowitz, Victor M
Woyke, Tanja
Kyrpides, Nikos C
Mukhopadhyay, Biswarup
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
topic_facet Microbiology
Biological Sciences
Genetics
Human Genome
Affordable and Clean Energy
Desulfurococcus
Sulfur-reducing crenarchaeon
Thermophile
Acidic hot spring
Biochemistry and Cell Biology
description This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H2S. A metabolic construction derived from the draft genome identified putative pathways for peptide degradation and sulfur respiration in this archaeon. Existence of several hydrogenase genes in the genome supported previous findings that H2 is produced during the growth of D. mobilis in the absence of sulfur. Interestingly, genes encoding glucose transport and utilization systems also exist in the D. mobilis genome though this archaeon does not utilize carbohydrate for growth. The draft genome of D. mobilis provides an additional mean for comparative genomic analysis of desulfurococci. In addition, our analysis on the Average Nucleotide Identity between D. mobilis and Desulfurococcus mucosus suggested that these two desulfurococci are two different strains of the same species.
format Article in Journal/Newspaper
author Susanti, Dwi
Johnson, Eric F
Lapidus, Alla
Han, James
Reddy, TBK
Pilay, Manoj
Ivanova, Natalia N
Markowitz, Victor M
Woyke, Tanja
Kyrpides, Nikos C
Mukhopadhyay, Biswarup
author_facet Susanti, Dwi
Johnson, Eric F
Lapidus, Alla
Han, James
Reddy, TBK
Pilay, Manoj
Ivanova, Natalia N
Markowitz, Victor M
Woyke, Tanja
Kyrpides, Nikos C
Mukhopadhyay, Biswarup
author_sort Susanti, Dwi
title Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
title_short Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
title_full Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
title_fullStr Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
title_full_unstemmed Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
title_sort permanent draft genome sequence of desulfurococcus mobilis type strain dsm 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of hveravellir, iceland
publisher eScholarship, University of California
publishDate 2016
url https://escholarship.org/uc/item/6k03k5rt
op_coverage 3
long_lat ENVELOPE(-19.546,-19.546,64.867,64.867)
geographic Hveravellir
geographic_facet Hveravellir
genre Iceland
genre_facet Iceland
op_source Environmental Microbiome, vol 11, iss 1
op_relation qt6k03k5rt
https://escholarship.org/uc/item/6k03k5rt
op_rights public
_version_ 1788062303046860800