Quantitative characterization of soil micro-aggregates: New opportunities from sub-micron resolution synchrotron X-ray microtomography
Soil microaggregates are the fundamental building block, at the micron scale, of the highly hierarchical structure of soils, and can exert a significant control on the local biological metabolism and microbial community partitioning. In this study we propose an analysis protocol for the morphometric...
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ftcdlib:oai:escholarship.org:ark:/13030/qt58m8d2tm 2024-06-23T07:51:39+00:00 Quantitative characterization of soil micro-aggregates: New opportunities from sub-micron resolution synchrotron X-ray microtomography Voltolini, Marco Taş, Neslihan Wang, Shi Brodie, Eoin L Ajo-Franklin, Jonathan B 2017-11-01 application/pdf https://escholarship.org/uc/item/58m8d2tm unknown eScholarship, University of California qt58m8d2tm https://escholarship.org/uc/item/58m8d2tm public Environmental Sciences Soil Sciences Synchrotron X-ray microCT Soil microaggregate Quantitative image analysis Modeling Biological Sciences Agricultural and Veterinary Sciences Agronomy & Agriculture article 2017 ftcdlib 2024-06-12T00:29:45Z Soil microaggregates are the fundamental building block, at the micron scale, of the highly hierarchical structure of soils, and can exert a significant control on the local biological metabolism and microbial community partitioning. In this study we propose an analysis protocol for the morphometric characterization of complete soil microaggregates based on sub-micron resolution synchrotron X-ray microtomography. A comprehensive characterization of the aggregate morphology is the first step towards a complete characterization of the soil microaggregates, when trying to correlate morphometric parameters with physical and/or biological properties, or when building models (e.g., effective diffusivity, microbial distribution, etc.). We demonstrate our characterization approach on two single microaggregate samples from dramatically different soil environments: one from Kansas, primarily composed by inorganic particles, and one from Barrow (Alaska) dominated by plant fragments. A series of state-of-the-art morphometric analysis techniques have been employed providing quantitative results highlighting specific differences of the two samples. The role of the microstructure in a scenario microbial population development has been discussed and it has been found that the Barrow microaggregate seems to be more favorable, from a purely geometrical point of view, as also confirmed by a simple model presented in this work. The potential of this approach, when coupled with chemical and biological analysis for a fully comprehensive characterization of soil aggregates in the larger picture of enhanced biological activity, is evident. Article in Journal/Newspaper Barrow Alaska University of California: eScholarship |
institution |
Open Polar |
collection |
University of California: eScholarship |
op_collection_id |
ftcdlib |
language |
unknown |
topic |
Environmental Sciences Soil Sciences Synchrotron X-ray microCT Soil microaggregate Quantitative image analysis Modeling Biological Sciences Agricultural and Veterinary Sciences Agronomy & Agriculture |
spellingShingle |
Environmental Sciences Soil Sciences Synchrotron X-ray microCT Soil microaggregate Quantitative image analysis Modeling Biological Sciences Agricultural and Veterinary Sciences Agronomy & Agriculture Voltolini, Marco Taş, Neslihan Wang, Shi Brodie, Eoin L Ajo-Franklin, Jonathan B Quantitative characterization of soil micro-aggregates: New opportunities from sub-micron resolution synchrotron X-ray microtomography |
topic_facet |
Environmental Sciences Soil Sciences Synchrotron X-ray microCT Soil microaggregate Quantitative image analysis Modeling Biological Sciences Agricultural and Veterinary Sciences Agronomy & Agriculture |
description |
Soil microaggregates are the fundamental building block, at the micron scale, of the highly hierarchical structure of soils, and can exert a significant control on the local biological metabolism and microbial community partitioning. In this study we propose an analysis protocol for the morphometric characterization of complete soil microaggregates based on sub-micron resolution synchrotron X-ray microtomography. A comprehensive characterization of the aggregate morphology is the first step towards a complete characterization of the soil microaggregates, when trying to correlate morphometric parameters with physical and/or biological properties, or when building models (e.g., effective diffusivity, microbial distribution, etc.). We demonstrate our characterization approach on two single microaggregate samples from dramatically different soil environments: one from Kansas, primarily composed by inorganic particles, and one from Barrow (Alaska) dominated by plant fragments. A series of state-of-the-art morphometric analysis techniques have been employed providing quantitative results highlighting specific differences of the two samples. The role of the microstructure in a scenario microbial population development has been discussed and it has been found that the Barrow microaggregate seems to be more favorable, from a purely geometrical point of view, as also confirmed by a simple model presented in this work. The potential of this approach, when coupled with chemical and biological analysis for a fully comprehensive characterization of soil aggregates in the larger picture of enhanced biological activity, is evident. |
format |
Article in Journal/Newspaper |
author |
Voltolini, Marco Taş, Neslihan Wang, Shi Brodie, Eoin L Ajo-Franklin, Jonathan B |
author_facet |
Voltolini, Marco Taş, Neslihan Wang, Shi Brodie, Eoin L Ajo-Franklin, Jonathan B |
author_sort |
Voltolini, Marco |
title |
Quantitative characterization of soil micro-aggregates: New opportunities from sub-micron resolution synchrotron X-ray microtomography |
title_short |
Quantitative characterization of soil micro-aggregates: New opportunities from sub-micron resolution synchrotron X-ray microtomography |
title_full |
Quantitative characterization of soil micro-aggregates: New opportunities from sub-micron resolution synchrotron X-ray microtomography |
title_fullStr |
Quantitative characterization of soil micro-aggregates: New opportunities from sub-micron resolution synchrotron X-ray microtomography |
title_full_unstemmed |
Quantitative characterization of soil micro-aggregates: New opportunities from sub-micron resolution synchrotron X-ray microtomography |
title_sort |
quantitative characterization of soil micro-aggregates: new opportunities from sub-micron resolution synchrotron x-ray microtomography |
publisher |
eScholarship, University of California |
publishDate |
2017 |
url |
https://escholarship.org/uc/item/58m8d2tm |
genre |
Barrow Alaska |
genre_facet |
Barrow Alaska |
op_relation |
qt58m8d2tm https://escholarship.org/uc/item/58m8d2tm |
op_rights |
public |
_version_ |
1802642778139656192 |