Machine learning with taxonomic family delimitation aids in the classification of ephemeral beaked whale events in passive acoustic monitoring.

Passive acoustic monitoring is an essential tool for studying beaked whale populations. This approach can monitor elusive and pelagic species, but the volume of data it generates has overwhelmed researchers ability to quantify species occurrence for effective conservation and management efforts. Aut...

Full description

Bibliographic Details
Published in:PLOS ONE
Main Authors: Solsona-Berga, Alba, DeAngelis, Annamaria, Cholewiak, Danielle, Trickey, Jennifer, Mueller-Brennan, Liam, Frasier, Kaitlin, Van Parijs, Sofie, Baumann-Pickering, Simone
Format: Article in Journal/Newspaper
Language:unknown
Published: eScholarship, University of California 2024
Subjects:
Online Access:https://escholarship.org/uc/item/566806qx
https://escholarship.org/content/qt566806qx/qt566806qx.pdf
https://doi.org/10.1371/journal.pone.0304744
id ftcdlib:oai:escholarship.org:ark:/13030/qt566806qx
record_format openpolar
spelling ftcdlib:oai:escholarship.org:ark:/13030/qt566806qx 2024-09-15T18:23:41+00:00 Machine learning with taxonomic family delimitation aids in the classification of ephemeral beaked whale events in passive acoustic monitoring. Solsona-Berga, Alba DeAngelis, Annamaria Cholewiak, Danielle Trickey, Jennifer Mueller-Brennan, Liam Frasier, Kaitlin Van Parijs, Sofie Baumann-Pickering, Simone 2024-01-01 application/pdf https://escholarship.org/uc/item/566806qx https://escholarship.org/content/qt566806qx/qt566806qx.pdf https://doi.org/10.1371/journal.pone.0304744 unknown eScholarship, University of California qt566806qx https://escholarship.org/uc/item/566806qx https://escholarship.org/content/qt566806qx/qt566806qx.pdf doi:10.1371/journal.pone.0304744 public PLoS ONE, vol 19, iss 6 Animals Whales Acoustics Vocalization Animal Machine Learning Neural Networks Computer article 2024 ftcdlib https://doi.org/10.1371/journal.pone.0304744 2024-06-28T06:28:00Z Passive acoustic monitoring is an essential tool for studying beaked whale populations. This approach can monitor elusive and pelagic species, but the volume of data it generates has overwhelmed researchers ability to quantify species occurrence for effective conservation and management efforts. Automation of data processing is crucial, and machine learning algorithms can rapidly identify species using their sounds. Beaked whale acoustic events, often infrequent and ephemeral, can be missed when co-occurring with signals of more abundant, and acoustically active species that dominate acoustic recordings. Prior efforts on large-scale classification of beaked whale signals with deep neural networks (DNNs) have approached the class as one of many classes, including other odontocete species and anthropogenic signals. That approach tends to miss ephemeral events in favor of more common and dominant classes. Here, we describe a DNN method for improved classification of beaked whale species using an extensive dataset from the western North Atlantic. We demonstrate that by training a DNN to focus on the taxonomic family of beaked whales, ephemeral events were correctly and efficiently identified to species, even with few echolocation clicks. By retrieving ephemeral events, this method can support improved estimation of beaked whale occurrence in regions of high odontocete acoustic activity. Article in Journal/Newspaper North Atlantic University of California: eScholarship PLOS ONE 19 6 e0304744
institution Open Polar
collection University of California: eScholarship
op_collection_id ftcdlib
language unknown
topic Animals
Whales
Acoustics
Vocalization
Animal
Machine Learning
Neural Networks
Computer
spellingShingle Animals
Whales
Acoustics
Vocalization
Animal
Machine Learning
Neural Networks
Computer
Solsona-Berga, Alba
DeAngelis, Annamaria
Cholewiak, Danielle
Trickey, Jennifer
Mueller-Brennan, Liam
Frasier, Kaitlin
Van Parijs, Sofie
Baumann-Pickering, Simone
Machine learning with taxonomic family delimitation aids in the classification of ephemeral beaked whale events in passive acoustic monitoring.
topic_facet Animals
Whales
Acoustics
Vocalization
Animal
Machine Learning
Neural Networks
Computer
description Passive acoustic monitoring is an essential tool for studying beaked whale populations. This approach can monitor elusive and pelagic species, but the volume of data it generates has overwhelmed researchers ability to quantify species occurrence for effective conservation and management efforts. Automation of data processing is crucial, and machine learning algorithms can rapidly identify species using their sounds. Beaked whale acoustic events, often infrequent and ephemeral, can be missed when co-occurring with signals of more abundant, and acoustically active species that dominate acoustic recordings. Prior efforts on large-scale classification of beaked whale signals with deep neural networks (DNNs) have approached the class as one of many classes, including other odontocete species and anthropogenic signals. That approach tends to miss ephemeral events in favor of more common and dominant classes. Here, we describe a DNN method for improved classification of beaked whale species using an extensive dataset from the western North Atlantic. We demonstrate that by training a DNN to focus on the taxonomic family of beaked whales, ephemeral events were correctly and efficiently identified to species, even with few echolocation clicks. By retrieving ephemeral events, this method can support improved estimation of beaked whale occurrence in regions of high odontocete acoustic activity.
format Article in Journal/Newspaper
author Solsona-Berga, Alba
DeAngelis, Annamaria
Cholewiak, Danielle
Trickey, Jennifer
Mueller-Brennan, Liam
Frasier, Kaitlin
Van Parijs, Sofie
Baumann-Pickering, Simone
author_facet Solsona-Berga, Alba
DeAngelis, Annamaria
Cholewiak, Danielle
Trickey, Jennifer
Mueller-Brennan, Liam
Frasier, Kaitlin
Van Parijs, Sofie
Baumann-Pickering, Simone
author_sort Solsona-Berga, Alba
title Machine learning with taxonomic family delimitation aids in the classification of ephemeral beaked whale events in passive acoustic monitoring.
title_short Machine learning with taxonomic family delimitation aids in the classification of ephemeral beaked whale events in passive acoustic monitoring.
title_full Machine learning with taxonomic family delimitation aids in the classification of ephemeral beaked whale events in passive acoustic monitoring.
title_fullStr Machine learning with taxonomic family delimitation aids in the classification of ephemeral beaked whale events in passive acoustic monitoring.
title_full_unstemmed Machine learning with taxonomic family delimitation aids in the classification of ephemeral beaked whale events in passive acoustic monitoring.
title_sort machine learning with taxonomic family delimitation aids in the classification of ephemeral beaked whale events in passive acoustic monitoring.
publisher eScholarship, University of California
publishDate 2024
url https://escholarship.org/uc/item/566806qx
https://escholarship.org/content/qt566806qx/qt566806qx.pdf
https://doi.org/10.1371/journal.pone.0304744
genre North Atlantic
genre_facet North Atlantic
op_source PLoS ONE, vol 19, iss 6
op_relation qt566806qx
https://escholarship.org/uc/item/566806qx
https://escholarship.org/content/qt566806qx/qt566806qx.pdf
doi:10.1371/journal.pone.0304744
op_rights public
op_doi https://doi.org/10.1371/journal.pone.0304744
container_title PLOS ONE
container_volume 19
container_issue 6
container_start_page e0304744
_version_ 1810463937669365760