Bacterial Diversity of Terrestrial Crystalline Volcanic Rocks, Iceland
International audience Bacteria inhabiting crystalline rocks from two terrestrial Icelandic volcanic lava flows of similar age and from the same geographical region, but differing in porosity and mineralogy, were characterised. Microarray (PhyloChip) and clone library analysis of 16S rRNA genes reve...
Published in: | Microbial Ecology |
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Online Access: | https://hal.science/halsde-00723396 https://doi.org/10.1007/s00248-011-9864-1 |
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ftccsdartic:oai:HAL:halsde-00723396v1 2024-02-11T09:59:00+01:00 Bacterial Diversity of Terrestrial Crystalline Volcanic Rocks, Iceland C. Kelly, Laura S. Cockell, Charles Herrera-Belaroussi, Aude Piceno, Yvette Andersen, Gary Desantis, Todd Brodie, Eoin Thorsteinsson, Thorsteinn Marteinsson, Viggó Poly, Franck Leroux, Xavier Geomicrobiology Research Group Milton Keynes Planetary and Space Sciences Research Institute Milton Keynes (PSSRI) Centre for Earth, Planetary, Space and Astronomical Research Milton Keynes (CEPSAR) The Open University Milton Keynes (OU)-The Open University Milton Keynes (OU)-Centre for Earth, Planetary, Space and Astronomical Research Milton Keynes (CEPSAR) The Open University Milton Keynes (OU)-The Open University Milton Keynes (OU) Ecology Department LBNL Berkeley Earth Science Division LBNL Berkeley (ESD) Lawrence Berkeley National Laboratory Berkeley (LBNL)-Lawrence Berkeley National Laboratory Berkeley (LBNL) Hydrology Division National Energy Authority Matís ohf./Icelandic Food and Biotech R&D Laboratoire d'Ecologie Microbienne - UMR 5557 (LEM) Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL) Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS) Leverhulme Trust F/00 269/N 2011 https://hal.science/halsde-00723396 https://doi.org/10.1007/s00248-011-9864-1 en eng HAL CCSD Springer Verlag info:eu-repo/semantics/altIdentifier/doi/10.1007/s00248-011-9864-1 halsde-00723396 https://hal.science/halsde-00723396 doi:10.1007/s00248-011-9864-1 PRODINRA: 220225 WOS: 000293030400007 ISSN: 0095-3628 EISSN: 1432-184X Microbial ecology https://hal.science/halsde-00723396 Microbial ecology, 2011, 62 (1), pp.69-79. ⟨10.1007/s00248-011-9864-1⟩ MONOXIDE-OXIDIZING BACTERIA CLONE LIBRARY MICROBIAL DIVERSITY COMMUNITY STRUCTURE BASALTIC GLASS FLOOR BASALT MICROARRAY POPULATIONS DEPOSITS DYNAMICS [SDE.BE]Environmental Sciences/Biodiversity and Ecology info:eu-repo/semantics/article Journal articles 2011 ftccsdartic https://doi.org/10.1007/s00248-011-9864-1 2024-01-27T23:38:12Z International audience Bacteria inhabiting crystalline rocks from two terrestrial Icelandic volcanic lava flows of similar age and from the same geographical region, but differing in porosity and mineralogy, were characterised. Microarray (PhyloChip) and clone library analysis of 16S rRNA genes revealed the presence of a diverse assemblage of bacteria in each lava flow. Both methods suggested a more diverse community at the Dómadalshraun site (rhyolitic/andesitic lava flow) than that present at the Hnausahraun site (basaltic lava flow). Proteobacteria dominated the clone library at the Dómadalshraun site, while Acidobacteria was the most abundant phylum in the Hnausahraun site. Although analysis of similarities of denaturing gradient gel electrophoresis profiles suggested a strong correlation of community structure with mineralogy, rock porosity may also play an important role in shaping the bacterial community in crystalline volcanic rocks. Clone sequences were most similar to uncultured microorganisms, mainly from soil environments. Of these, Antarctic soils and temperate rhizosphere soils were prominent, as were clones retrieved from Hawaiian and Andean volcanic soils. The novel diversity of these Icelandic microbial communities was supported by the finding that up to 46% of clones displayed <85% sequence identities to sequences currently deposited in the RDP database Article in Journal/Newspaper Antarc* Antarctic Iceland Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Antarctic Dómadalshraun ENVELOPE(-19.105,-19.105,64.041,64.041) Microbial Ecology 62 1 69 79 |
institution |
Open Polar |
collection |
Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) |
op_collection_id |
ftccsdartic |
language |
English |
topic |
MONOXIDE-OXIDIZING BACTERIA CLONE LIBRARY MICROBIAL DIVERSITY COMMUNITY STRUCTURE BASALTIC GLASS FLOOR BASALT MICROARRAY POPULATIONS DEPOSITS DYNAMICS [SDE.BE]Environmental Sciences/Biodiversity and Ecology |
spellingShingle |
MONOXIDE-OXIDIZING BACTERIA CLONE LIBRARY MICROBIAL DIVERSITY COMMUNITY STRUCTURE BASALTIC GLASS FLOOR BASALT MICROARRAY POPULATIONS DEPOSITS DYNAMICS [SDE.BE]Environmental Sciences/Biodiversity and Ecology C. Kelly, Laura S. Cockell, Charles Herrera-Belaroussi, Aude Piceno, Yvette Andersen, Gary Desantis, Todd Brodie, Eoin Thorsteinsson, Thorsteinn Marteinsson, Viggó Poly, Franck Leroux, Xavier Bacterial Diversity of Terrestrial Crystalline Volcanic Rocks, Iceland |
topic_facet |
MONOXIDE-OXIDIZING BACTERIA CLONE LIBRARY MICROBIAL DIVERSITY COMMUNITY STRUCTURE BASALTIC GLASS FLOOR BASALT MICROARRAY POPULATIONS DEPOSITS DYNAMICS [SDE.BE]Environmental Sciences/Biodiversity and Ecology |
description |
International audience Bacteria inhabiting crystalline rocks from two terrestrial Icelandic volcanic lava flows of similar age and from the same geographical region, but differing in porosity and mineralogy, were characterised. Microarray (PhyloChip) and clone library analysis of 16S rRNA genes revealed the presence of a diverse assemblage of bacteria in each lava flow. Both methods suggested a more diverse community at the Dómadalshraun site (rhyolitic/andesitic lava flow) than that present at the Hnausahraun site (basaltic lava flow). Proteobacteria dominated the clone library at the Dómadalshraun site, while Acidobacteria was the most abundant phylum in the Hnausahraun site. Although analysis of similarities of denaturing gradient gel electrophoresis profiles suggested a strong correlation of community structure with mineralogy, rock porosity may also play an important role in shaping the bacterial community in crystalline volcanic rocks. Clone sequences were most similar to uncultured microorganisms, mainly from soil environments. Of these, Antarctic soils and temperate rhizosphere soils were prominent, as were clones retrieved from Hawaiian and Andean volcanic soils. The novel diversity of these Icelandic microbial communities was supported by the finding that up to 46% of clones displayed <85% sequence identities to sequences currently deposited in the RDP database |
author2 |
Geomicrobiology Research Group Milton Keynes Planetary and Space Sciences Research Institute Milton Keynes (PSSRI) Centre for Earth, Planetary, Space and Astronomical Research Milton Keynes (CEPSAR) The Open University Milton Keynes (OU)-The Open University Milton Keynes (OU)-Centre for Earth, Planetary, Space and Astronomical Research Milton Keynes (CEPSAR) The Open University Milton Keynes (OU)-The Open University Milton Keynes (OU) Ecology Department LBNL Berkeley Earth Science Division LBNL Berkeley (ESD) Lawrence Berkeley National Laboratory Berkeley (LBNL)-Lawrence Berkeley National Laboratory Berkeley (LBNL) Hydrology Division National Energy Authority Matís ohf./Icelandic Food and Biotech R&D Laboratoire d'Ecologie Microbienne - UMR 5557 (LEM) Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL) Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS) Leverhulme Trust F/00 269/N |
format |
Article in Journal/Newspaper |
author |
C. Kelly, Laura S. Cockell, Charles Herrera-Belaroussi, Aude Piceno, Yvette Andersen, Gary Desantis, Todd Brodie, Eoin Thorsteinsson, Thorsteinn Marteinsson, Viggó Poly, Franck Leroux, Xavier |
author_facet |
C. Kelly, Laura S. Cockell, Charles Herrera-Belaroussi, Aude Piceno, Yvette Andersen, Gary Desantis, Todd Brodie, Eoin Thorsteinsson, Thorsteinn Marteinsson, Viggó Poly, Franck Leroux, Xavier |
author_sort |
C. Kelly, Laura |
title |
Bacterial Diversity of Terrestrial Crystalline Volcanic Rocks, Iceland |
title_short |
Bacterial Diversity of Terrestrial Crystalline Volcanic Rocks, Iceland |
title_full |
Bacterial Diversity of Terrestrial Crystalline Volcanic Rocks, Iceland |
title_fullStr |
Bacterial Diversity of Terrestrial Crystalline Volcanic Rocks, Iceland |
title_full_unstemmed |
Bacterial Diversity of Terrestrial Crystalline Volcanic Rocks, Iceland |
title_sort |
bacterial diversity of terrestrial crystalline volcanic rocks, iceland |
publisher |
HAL CCSD |
publishDate |
2011 |
url |
https://hal.science/halsde-00723396 https://doi.org/10.1007/s00248-011-9864-1 |
long_lat |
ENVELOPE(-19.105,-19.105,64.041,64.041) |
geographic |
Antarctic Dómadalshraun |
geographic_facet |
Antarctic Dómadalshraun |
genre |
Antarc* Antarctic Iceland |
genre_facet |
Antarc* Antarctic Iceland |
op_source |
ISSN: 0095-3628 EISSN: 1432-184X Microbial ecology https://hal.science/halsde-00723396 Microbial ecology, 2011, 62 (1), pp.69-79. ⟨10.1007/s00248-011-9864-1⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1007/s00248-011-9864-1 halsde-00723396 https://hal.science/halsde-00723396 doi:10.1007/s00248-011-9864-1 PRODINRA: 220225 WOS: 000293030400007 |
op_doi |
https://doi.org/10.1007/s00248-011-9864-1 |
container_title |
Microbial Ecology |
container_volume |
62 |
container_issue |
1 |
container_start_page |
69 |
op_container_end_page |
79 |
_version_ |
1790594878076354560 |