No effect of model distribution on long-term trends, even with underdispersion

International audience While many studies have illustrated the decline of animal populations—particularly of farmland birds—the statistical analyses, design, and protocols used have raised some concerns and criticism. Using a 27-year dataset (1996–2022) based on recording the number of skylarks (Ala...

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Published in:Ecological Informatics
Main Authors: Schneider-Bruchon, Thomas, Gaba, Sabrina, Bretagnolle, Vincent
Other Authors: Centre d'Études Biologiques de Chizé - UMR 7372 (CEBC), La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), LTSER «Zone Atelier Plaine & Val de Sevre» France, Institut National de la Recherche Agronomique (INRA)-La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS)
Format: Article in Journal/Newspaper
Language:English
Published: HAL CCSD 2023
Subjects:
Online Access:https://hal.science/hal-04192086
https://doi.org/10.1016/j.ecoinf.2023.102222
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spelling ftccsdartic:oai:HAL:hal-04192086v1 2024-02-27T08:32:36+00:00 No effect of model distribution on long-term trends, even with underdispersion Schneider-Bruchon, Thomas Gaba, Sabrina Bretagnolle, Vincent Centre d'Études Biologiques de Chizé - UMR 7372 (CEBC) La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) LTSER «Zone Atelier Plaine & Val de Sevre» France Institut National de la Recherche Agronomique (INRA)-La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS) 2023 https://hal.science/hal-04192086 https://doi.org/10.1016/j.ecoinf.2023.102222 en eng HAL CCSD Elsevier info:eu-repo/semantics/altIdentifier/doi/10.1016/j.ecoinf.2023.102222 hal-04192086 https://hal.science/hal-04192086 doi:10.1016/j.ecoinf.2023.102222 ISSN: 1574-9541 Ecological Informatics https://hal.science/hal-04192086 Ecological Informatics, 2023, 77, pp.102222. ⟨10.1016/j.ecoinf.2023.102222⟩ General linear mixed model Long-term trend Model distribution Underdispersion Bayesian information criterion Skylark [SDE.BE]Environmental Sciences/Biodiversity and Ecology [STAT.AP]Statistics [stat]/Applications [stat.AP] info:eu-repo/semantics/article Journal articles 2023 ftccsdartic https://doi.org/10.1016/j.ecoinf.2023.102222 2024-01-28T00:35:33Z International audience While many studies have illustrated the decline of animal populations—particularly of farmland birds—the statistical analyses, design, and protocols used have raised some concerns and criticism. Using a 27-year dataset (1996–2022) based on recording the number of skylarks (Alauda arvensis) at 160 longitudinal count points, our study confronts two approaches commonly used to model long-term trends. The first uses a single model (based on a priori ecological knowledge), while the second is an a posteriori approach that relies on a multi-model selection among candidate models that account for probability distributions to describe the error structure. Here we investigate whether the statistical distribution of modelled variables and the method of including covariates in the model affect trend estimates. With a large amount of data and in the case of underdispersion, we found that the model distribution used had no impact on the estimation of the long-term trend. Moreover, adding confounding covariates did not change or improve the trend estimation, at least when data were obtained from a well-designed protocol (our case). In contrast to other studies reporting an effect of the model's distribution on long-term trends, especially in the presence of overdispersion, our results offer a new perspective on the presence of underdispersion, where simple models perform equally well as complex ones. Further research is now needed on multiple species data or on smaller data sets to check the generality of our findings. Article in Journal/Newspaper Alauda arvensis Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Ecological Informatics 77 102222
institution Open Polar
collection Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe)
op_collection_id ftccsdartic
language English
topic General linear mixed model
Long-term trend
Model distribution
Underdispersion
Bayesian information criterion
Skylark
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
[STAT.AP]Statistics [stat]/Applications [stat.AP]
spellingShingle General linear mixed model
Long-term trend
Model distribution
Underdispersion
Bayesian information criterion
Skylark
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
[STAT.AP]Statistics [stat]/Applications [stat.AP]
Schneider-Bruchon, Thomas
Gaba, Sabrina
Bretagnolle, Vincent
No effect of model distribution on long-term trends, even with underdispersion
topic_facet General linear mixed model
Long-term trend
Model distribution
Underdispersion
Bayesian information criterion
Skylark
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
[STAT.AP]Statistics [stat]/Applications [stat.AP]
description International audience While many studies have illustrated the decline of animal populations—particularly of farmland birds—the statistical analyses, design, and protocols used have raised some concerns and criticism. Using a 27-year dataset (1996–2022) based on recording the number of skylarks (Alauda arvensis) at 160 longitudinal count points, our study confronts two approaches commonly used to model long-term trends. The first uses a single model (based on a priori ecological knowledge), while the second is an a posteriori approach that relies on a multi-model selection among candidate models that account for probability distributions to describe the error structure. Here we investigate whether the statistical distribution of modelled variables and the method of including covariates in the model affect trend estimates. With a large amount of data and in the case of underdispersion, we found that the model distribution used had no impact on the estimation of the long-term trend. Moreover, adding confounding covariates did not change or improve the trend estimation, at least when data were obtained from a well-designed protocol (our case). In contrast to other studies reporting an effect of the model's distribution on long-term trends, especially in the presence of overdispersion, our results offer a new perspective on the presence of underdispersion, where simple models perform equally well as complex ones. Further research is now needed on multiple species data or on smaller data sets to check the generality of our findings.
author2 Centre d'Études Biologiques de Chizé - UMR 7372 (CEBC)
La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
LTSER «Zone Atelier Plaine & Val de Sevre» France
Institut National de la Recherche Agronomique (INRA)-La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS)
format Article in Journal/Newspaper
author Schneider-Bruchon, Thomas
Gaba, Sabrina
Bretagnolle, Vincent
author_facet Schneider-Bruchon, Thomas
Gaba, Sabrina
Bretagnolle, Vincent
author_sort Schneider-Bruchon, Thomas
title No effect of model distribution on long-term trends, even with underdispersion
title_short No effect of model distribution on long-term trends, even with underdispersion
title_full No effect of model distribution on long-term trends, even with underdispersion
title_fullStr No effect of model distribution on long-term trends, even with underdispersion
title_full_unstemmed No effect of model distribution on long-term trends, even with underdispersion
title_sort no effect of model distribution on long-term trends, even with underdispersion
publisher HAL CCSD
publishDate 2023
url https://hal.science/hal-04192086
https://doi.org/10.1016/j.ecoinf.2023.102222
genre Alauda arvensis
genre_facet Alauda arvensis
op_source ISSN: 1574-9541
Ecological Informatics
https://hal.science/hal-04192086
Ecological Informatics, 2023, 77, pp.102222. ⟨10.1016/j.ecoinf.2023.102222⟩
op_relation info:eu-repo/semantics/altIdentifier/doi/10.1016/j.ecoinf.2023.102222
hal-04192086
https://hal.science/hal-04192086
doi:10.1016/j.ecoinf.2023.102222
op_doi https://doi.org/10.1016/j.ecoinf.2023.102222
container_title Ecological Informatics
container_volume 77
container_start_page 102222
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