Morphological and Ribosomal DNA-based Characterization of Six Antarctic Ciliate Morphospecies from the Amundsen Sea with Phylogenetic Analyses
We characterized six tintinnid ciliates from Antarctic waters using molecular markers and morphological traits: Amphorellopsis quinquealata, Codonellopsis gaussi, Cymatocylis convallaria, Cy. calyciformis, Cy. drygalskii, and Laackmanniella prolongata. The 100% similarity in SSU-ITS1-5.8S rDNA-ITS2-...
Published in: | Journal of Eukaryotic Microbiology |
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Online Access: | https://hal.archives-ouvertes.fr/hal-03502623 https://doi.org/10.1111/jeu.12057 |
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ftccsdartic:oai:HAL:hal-03502623v1 2023-05-15T13:23:56+02:00 Morphological and Ribosomal DNA-based Characterization of Six Antarctic Ciliate Morphospecies from the Amundsen Sea with Phylogenetic Analyses Kim, Sun Young Choi, Joong Ki Dolan, John R. Shin, Hyoung Chul Lee, Sanghoon Yang, Eun Jin Laboratoire d'océanographie de Villefranche (LOV) Observatoire océanologique de Villefranche-sur-mer (OOVM) Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS) Korean Ocean Research and Development Institute (KORDI) 2013 https://hal.archives-ouvertes.fr/hal-03502623 https://doi.org/10.1111/jeu.12057 en eng HAL CCSD info:eu-repo/semantics/altIdentifier/doi/10.1111/jeu.12057 hal-03502623 https://hal.archives-ouvertes.fr/hal-03502623 doi:10.1111/jeu.12057 JOURNAL OF EUKARYOTIC MICROBIOLOGY https://hal.archives-ouvertes.fr/hal-03502623 JOURNAL OF EUKARYOTIC MICROBIOLOGY, 2013, 60 (5), pp.497-513. ⟨10.1111/jeu.12057⟩ [SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography info:eu-repo/semantics/article Journal articles 2013 ftccsdartic https://doi.org/10.1111/jeu.12057 2022-01-01T23:24:31Z We characterized six tintinnid ciliates from Antarctic waters using molecular markers and morphological traits: Amphorellopsis quinquealata, Codonellopsis gaussi, Cymatocylis convallaria, Cy. calyciformis, Cy. drygalskii, and Laackmanniella prolongata. The 100% similarity in SSU-ITS1-5.8S rDNA-ITS2-partial LSU rDNA sequences among Cy. convallaria, Cy. calyciformis, and Cy. drygalskii is supportive of synonymy. Codonellopsis gaussi and L. prolongata also showed high levels of similarity in SSU rDNA (99.83%) and the D2 domain of LSU rDNA (95.77%), suggesting that they are closely related. Phylogenetic analysis placed Cymatocylis in the Rhabdonellidae, Amphorellopsis in the Tintinnidae and L. prolongata/Co. gaussi within the Dictyocystidae. Article in Journal/Newspaper Amundsen Sea Antarc* Antarctic Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Amundsen Sea Antarctic Journal of Eukaryotic Microbiology 60 5 497 513 |
institution |
Open Polar |
collection |
Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) |
op_collection_id |
ftccsdartic |
language |
English |
topic |
[SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography |
spellingShingle |
[SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography Kim, Sun Young Choi, Joong Ki Dolan, John R. Shin, Hyoung Chul Lee, Sanghoon Yang, Eun Jin Morphological and Ribosomal DNA-based Characterization of Six Antarctic Ciliate Morphospecies from the Amundsen Sea with Phylogenetic Analyses |
topic_facet |
[SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography |
description |
We characterized six tintinnid ciliates from Antarctic waters using molecular markers and morphological traits: Amphorellopsis quinquealata, Codonellopsis gaussi, Cymatocylis convallaria, Cy. calyciformis, Cy. drygalskii, and Laackmanniella prolongata. The 100% similarity in SSU-ITS1-5.8S rDNA-ITS2-partial LSU rDNA sequences among Cy. convallaria, Cy. calyciformis, and Cy. drygalskii is supportive of synonymy. Codonellopsis gaussi and L. prolongata also showed high levels of similarity in SSU rDNA (99.83%) and the D2 domain of LSU rDNA (95.77%), suggesting that they are closely related. Phylogenetic analysis placed Cymatocylis in the Rhabdonellidae, Amphorellopsis in the Tintinnidae and L. prolongata/Co. gaussi within the Dictyocystidae. |
author2 |
Laboratoire d'océanographie de Villefranche (LOV) Observatoire océanologique de Villefranche-sur-mer (OOVM) Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS) Korean Ocean Research and Development Institute (KORDI) |
format |
Article in Journal/Newspaper |
author |
Kim, Sun Young Choi, Joong Ki Dolan, John R. Shin, Hyoung Chul Lee, Sanghoon Yang, Eun Jin |
author_facet |
Kim, Sun Young Choi, Joong Ki Dolan, John R. Shin, Hyoung Chul Lee, Sanghoon Yang, Eun Jin |
author_sort |
Kim, Sun Young |
title |
Morphological and Ribosomal DNA-based Characterization of Six Antarctic Ciliate Morphospecies from the Amundsen Sea with Phylogenetic Analyses |
title_short |
Morphological and Ribosomal DNA-based Characterization of Six Antarctic Ciliate Morphospecies from the Amundsen Sea with Phylogenetic Analyses |
title_full |
Morphological and Ribosomal DNA-based Characterization of Six Antarctic Ciliate Morphospecies from the Amundsen Sea with Phylogenetic Analyses |
title_fullStr |
Morphological and Ribosomal DNA-based Characterization of Six Antarctic Ciliate Morphospecies from the Amundsen Sea with Phylogenetic Analyses |
title_full_unstemmed |
Morphological and Ribosomal DNA-based Characterization of Six Antarctic Ciliate Morphospecies from the Amundsen Sea with Phylogenetic Analyses |
title_sort |
morphological and ribosomal dna-based characterization of six antarctic ciliate morphospecies from the amundsen sea with phylogenetic analyses |
publisher |
HAL CCSD |
publishDate |
2013 |
url |
https://hal.archives-ouvertes.fr/hal-03502623 https://doi.org/10.1111/jeu.12057 |
geographic |
Amundsen Sea Antarctic |
geographic_facet |
Amundsen Sea Antarctic |
genre |
Amundsen Sea Antarc* Antarctic |
genre_facet |
Amundsen Sea Antarc* Antarctic |
op_source |
JOURNAL OF EUKARYOTIC MICROBIOLOGY https://hal.archives-ouvertes.fr/hal-03502623 JOURNAL OF EUKARYOTIC MICROBIOLOGY, 2013, 60 (5), pp.497-513. ⟨10.1111/jeu.12057⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1111/jeu.12057 hal-03502623 https://hal.archives-ouvertes.fr/hal-03502623 doi:10.1111/jeu.12057 |
op_doi |
https://doi.org/10.1111/jeu.12057 |
container_title |
Journal of Eukaryotic Microbiology |
container_volume |
60 |
container_issue |
5 |
container_start_page |
497 |
op_container_end_page |
513 |
_version_ |
1766376449170735104 |