The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic
International audience The genetic diversity, morphology and biogeography of Ammonia specimens was investigated across the Northeast (NE) Atlantic margins, to enhance the regional (palaeo)ecological studies based on this genus. Living specimens were collected from 22 sampling locations ranging from...
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ftccsdartic:oai:HAL:hal-03118521v1 2023-05-15T17:41:41+02:00 The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic Bird, Clare Schweizer, Magali Roberts, Angela Austin, William E.N. Knudsen, Karen Luise Evans, Katharine Filipsson, Helena Sayer, Martin D.J. Geslin, Emmanuelle Darling, Kate Université d'Angers (UA) 2020-03 https://hal.univ-angers.fr/hal-03118521 https://doi.org/10.1016/j.marmicro.2019.02.001 en eng HAL CCSD Elsevier info:eu-repo/semantics/altIdentifier/doi/10.1016/j.marmicro.2019.02.001 hal-03118521 https://hal.univ-angers.fr/hal-03118521 doi:10.1016/j.marmicro.2019.02.001 ISSN: 0377-8398 Marine Micropaleontology https://hal.univ-angers.fr/hal-03118521 Marine Micropaleontology, Elsevier, 2020, 155, pp.101726. ⟨10.1016/j.marmicro.2019.02.001⟩ https://www.sciencedirect.com/science/article/abs/pii/S0377839818300860?via%3Dihub Ammonia Genetic types Morphometrics Biogeography Taxonomy [SDE]Environmental Sciences info:eu-repo/semantics/article Journal articles 2020 ftccsdartic https://doi.org/10.1016/j.marmicro.2019.02.001 2022-04-09T23:02:39Z International audience The genetic diversity, morphology and biogeography of Ammonia specimens was investigated across the Northeast (NE) Atlantic margins, to enhance the regional (palaeo)ecological studies based on this genus. Living specimens were collected from 22 sampling locations ranging from Shetland to Portugal to determine the distribution of Ammonia genetic types across the NE Atlantic shelf biomes. We successfully imaged (via scanning electron microscopy, SEM) and genotyped 378 Ammonia specimens, based on the small subunit (SSU) rRNA gene, linking morphology to genetic type. Phylogenetic analyses enabled identification of seven genetic types and subtypes inhabiting the NE Atlantic margins. Where possible, we linked SSU genetic types to the established large subunit (LSU) T-type nomenclature of Hayward et al. (2004). SSU genetic types with no matching T-type LSU gene sequences in GenBank were allocated new T-numbers to bring them in line with the widely adopted T-type nomenclature. The genetic types identified in the NE Atlantic margins are T1, T2, T3, T6, and T15, with both T2 and T3 being split further into the subtypes T2A and T2B, and T3S and T3V respectively. The seven genetic types and subtypes exhibit different biogeographical distributions and/or ecological preferences, but co-occurrence of two or more genetic types is common. A shore-line transect at Dartmouth (South England) demonstrates that sampling position on shore (high, middle or low shore) influences the genetic type collected, the numbers of genetic types that co-occur, and the numbers of individuals collected. We performed morphometric analysis on the SEM images of 158 genotyped Ammonia specimens. T15 and the subtypes T3S and T3V can be morphologically distinguished. We can unequivocally assign the taxonomic names A. batava and A. falsobeccarii to T3S and T15, respectively. However, the end members of T1, T2A, T2B and T6 cannot be unambiguously distinguished, and therefore these genetic types are partially cryptic. However, we ... Article in Journal/Newspaper Northeast Atlantic Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Hayward ENVELOPE(167.350,167.350,-78.117,-78.117) Marine Micropaleontology 155 101726 |
institution |
Open Polar |
collection |
Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) |
op_collection_id |
ftccsdartic |
language |
English |
topic |
Ammonia Genetic types Morphometrics Biogeography Taxonomy [SDE]Environmental Sciences |
spellingShingle |
Ammonia Genetic types Morphometrics Biogeography Taxonomy [SDE]Environmental Sciences Bird, Clare Schweizer, Magali Roberts, Angela Austin, William E.N. Knudsen, Karen Luise Evans, Katharine Filipsson, Helena Sayer, Martin D.J. Geslin, Emmanuelle Darling, Kate The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic |
topic_facet |
Ammonia Genetic types Morphometrics Biogeography Taxonomy [SDE]Environmental Sciences |
description |
International audience The genetic diversity, morphology and biogeography of Ammonia specimens was investigated across the Northeast (NE) Atlantic margins, to enhance the regional (palaeo)ecological studies based on this genus. Living specimens were collected from 22 sampling locations ranging from Shetland to Portugal to determine the distribution of Ammonia genetic types across the NE Atlantic shelf biomes. We successfully imaged (via scanning electron microscopy, SEM) and genotyped 378 Ammonia specimens, based on the small subunit (SSU) rRNA gene, linking morphology to genetic type. Phylogenetic analyses enabled identification of seven genetic types and subtypes inhabiting the NE Atlantic margins. Where possible, we linked SSU genetic types to the established large subunit (LSU) T-type nomenclature of Hayward et al. (2004). SSU genetic types with no matching T-type LSU gene sequences in GenBank were allocated new T-numbers to bring them in line with the widely adopted T-type nomenclature. The genetic types identified in the NE Atlantic margins are T1, T2, T3, T6, and T15, with both T2 and T3 being split further into the subtypes T2A and T2B, and T3S and T3V respectively. The seven genetic types and subtypes exhibit different biogeographical distributions and/or ecological preferences, but co-occurrence of two or more genetic types is common. A shore-line transect at Dartmouth (South England) demonstrates that sampling position on shore (high, middle or low shore) influences the genetic type collected, the numbers of genetic types that co-occur, and the numbers of individuals collected. We performed morphometric analysis on the SEM images of 158 genotyped Ammonia specimens. T15 and the subtypes T3S and T3V can be morphologically distinguished. We can unequivocally assign the taxonomic names A. batava and A. falsobeccarii to T3S and T15, respectively. However, the end members of T1, T2A, T2B and T6 cannot be unambiguously distinguished, and therefore these genetic types are partially cryptic. However, we ... |
author2 |
Université d'Angers (UA) |
format |
Article in Journal/Newspaper |
author |
Bird, Clare Schweizer, Magali Roberts, Angela Austin, William E.N. Knudsen, Karen Luise Evans, Katharine Filipsson, Helena Sayer, Martin D.J. Geslin, Emmanuelle Darling, Kate |
author_facet |
Bird, Clare Schweizer, Magali Roberts, Angela Austin, William E.N. Knudsen, Karen Luise Evans, Katharine Filipsson, Helena Sayer, Martin D.J. Geslin, Emmanuelle Darling, Kate |
author_sort |
Bird, Clare |
title |
The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic |
title_short |
The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic |
title_full |
The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic |
title_fullStr |
The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic |
title_full_unstemmed |
The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic |
title_sort |
genetic diversity, morphology, biogeography, and taxonomic designations of ammonia (foraminifera) in the northeast atlantic |
publisher |
HAL CCSD |
publishDate |
2020 |
url |
https://hal.univ-angers.fr/hal-03118521 https://doi.org/10.1016/j.marmicro.2019.02.001 |
long_lat |
ENVELOPE(167.350,167.350,-78.117,-78.117) |
geographic |
Hayward |
geographic_facet |
Hayward |
genre |
Northeast Atlantic |
genre_facet |
Northeast Atlantic |
op_source |
ISSN: 0377-8398 Marine Micropaleontology https://hal.univ-angers.fr/hal-03118521 Marine Micropaleontology, Elsevier, 2020, 155, pp.101726. ⟨10.1016/j.marmicro.2019.02.001⟩ https://www.sciencedirect.com/science/article/abs/pii/S0377839818300860?via%3Dihub |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1016/j.marmicro.2019.02.001 hal-03118521 https://hal.univ-angers.fr/hal-03118521 doi:10.1016/j.marmicro.2019.02.001 |
op_doi |
https://doi.org/10.1016/j.marmicro.2019.02.001 |
container_title |
Marine Micropaleontology |
container_volume |
155 |
container_start_page |
101726 |
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1766143389918560256 |