Structural genomic changes underlie alternative reproductive strategies in the ruff ( Philomachus pugnax )
The ruff is a Palearctic wader with a spectacular lekking behavior where highly ornamented males compete for females(1-4). This bird has one of the most remarkable mating systems in the animal kingdom, comprising three different male morphs (independents, satellites and faeders) that differ in behav...
Published in: | Nature Genetics |
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Online Access: | https://hal.inrae.fr/hal-02641550 https://doi.org/10.1038/ng.3430 |
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ftccsdartic:oai:HAL:hal-02641550v1 2023-05-15T17:58:41+02:00 Structural genomic changes underlie alternative reproductive strategies in the ruff ( Philomachus pugnax ) Lamichhaney, Sangeet Fan, Guangyi Widemo, Fredrik Gunnarsson, Ulrika Thalmann, Doreen Schwochow Hoeppner, Marc P. Kerje, Susanne Gustafson, Ulla Shi, Chengcheng Zhang, He Chen, Wenbin Liang, Xinming Huang, Leihuan Wang, Jiahao Liang, Enjing Wu, Qiong Lee, Simon Ming-Yuen Xu, Xun Höglund, Jacob Liu, Xin Andersson, Leif Department of Medical Biochemistry and Microbiology Uppsala University Beijing Genomics Institute Shenzhen (BGI) University of Macau (UMac) Department of Wildlife, Fish and Environmental Studies Swedish University of Agricultural Sciences (SLU) Institut National de la Recherche Agronomique (INRA) Department of Animal Bredding and Genetics Science for Life Laboratory, Department of Medical Biochemistry and Microbiology Bioinformatics Infrastructure for Life Sciences (BILS) University of Gothenburg (GU) Department of Ecology and Genetics Uppsala (EBC) Department of Veterinary Integrative Biosciences College of Veterinary Medicine and Biomedical Sciences Knut and Alice Wallenberg foundation; National Basic Research Program of China (973 Program) 2013CB835204 Shenzhen municipal government of China (DRC-SZ) 843 Key Laboratory of Genomics; Chinese Ministry of Agriculture; Platform of Whole Genome-Based Molecular Breeding; ShenZhen Engineering Laboratory for Genomics-Assisted Animal Breeding; Swedish Research Council 1989-2546, 1992-2685, 2013-5418, 2001-6005, 80576801, 70374401 Uppsala University and Hospital; Science for Life Laboratory 2016 https://hal.inrae.fr/hal-02641550 https://doi.org/10.1038/ng.3430 en eng HAL CCSD Nature Publishing Group info:eu-repo/semantics/altIdentifier/doi/10.1038/ng.3430 info:eu-repo/semantics/altIdentifier/pmid/26569123 hal-02641550 https://hal.inrae.fr/hal-02641550 doi:10.1038/ng.3430 PRODINRA: 349710 WOS: 000367255300018 PUBMED: 26569123 ISSN: 1061-4036 EISSN: 1546-1718 Nature Genetics https://hal.inrae.fr/hal-02641550 Nature Genetics, Nature Publishing Group, 2016, 48 (1), pp.84-88. ⟨10.1038/ng.3430⟩ Dna-sequencing data Zonotrichia-albicollis Social-behavior Polymorphism Mimicry Complex Identification Association Phenotypes [SDV]Life Sciences [q-bio] info:eu-repo/semantics/article Journal articles 2016 ftccsdartic https://doi.org/10.1038/ng.3430 2020-12-24T04:33:32Z The ruff is a Palearctic wader with a spectacular lekking behavior where highly ornamented males compete for females(1-4). This bird has one of the most remarkable mating systems in the animal kingdom, comprising three different male morphs (independents, satellites and faeders) that differ in behavior, plumage color and body size. Remarkably, the satellite and faeder morphs are controlled by dominant alleles(5,6). Here we have used whole-genome sequencing and resolved the enigma of how such complex phenotypic differences can have a simple genetic basis. The Satellite and Faeder alleles are both associated with a 4.5-Mb inversion that occurred about 3.8 million years ago. We propose an evolutionary scenario where the Satellite chromosome arose by a rare recombination event about 500,000 years ago. The ruff mating system is the result of an evolutionary process in which multiple genetic changes contributing to phenotypic differences between morphs have accumulated within the inverted region. Article in Journal/Newspaper Philomachus pugnax Ruff Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Nature Genetics 48 1 84 88 |
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Open Polar |
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Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) |
op_collection_id |
ftccsdartic |
language |
English |
topic |
Dna-sequencing data Zonotrichia-albicollis Social-behavior Polymorphism Mimicry Complex Identification Association Phenotypes [SDV]Life Sciences [q-bio] |
spellingShingle |
Dna-sequencing data Zonotrichia-albicollis Social-behavior Polymorphism Mimicry Complex Identification Association Phenotypes [SDV]Life Sciences [q-bio] Lamichhaney, Sangeet Fan, Guangyi Widemo, Fredrik Gunnarsson, Ulrika Thalmann, Doreen Schwochow Hoeppner, Marc P. Kerje, Susanne Gustafson, Ulla Shi, Chengcheng Zhang, He Chen, Wenbin Liang, Xinming Huang, Leihuan Wang, Jiahao Liang, Enjing Wu, Qiong Lee, Simon Ming-Yuen Xu, Xun Höglund, Jacob Liu, Xin Andersson, Leif Structural genomic changes underlie alternative reproductive strategies in the ruff ( Philomachus pugnax ) |
topic_facet |
Dna-sequencing data Zonotrichia-albicollis Social-behavior Polymorphism Mimicry Complex Identification Association Phenotypes [SDV]Life Sciences [q-bio] |
description |
The ruff is a Palearctic wader with a spectacular lekking behavior where highly ornamented males compete for females(1-4). This bird has one of the most remarkable mating systems in the animal kingdom, comprising three different male morphs (independents, satellites and faeders) that differ in behavior, plumage color and body size. Remarkably, the satellite and faeder morphs are controlled by dominant alleles(5,6). Here we have used whole-genome sequencing and resolved the enigma of how such complex phenotypic differences can have a simple genetic basis. The Satellite and Faeder alleles are both associated with a 4.5-Mb inversion that occurred about 3.8 million years ago. We propose an evolutionary scenario where the Satellite chromosome arose by a rare recombination event about 500,000 years ago. The ruff mating system is the result of an evolutionary process in which multiple genetic changes contributing to phenotypic differences between morphs have accumulated within the inverted region. |
author2 |
Department of Medical Biochemistry and Microbiology Uppsala University Beijing Genomics Institute Shenzhen (BGI) University of Macau (UMac) Department of Wildlife, Fish and Environmental Studies Swedish University of Agricultural Sciences (SLU) Institut National de la Recherche Agronomique (INRA) Department of Animal Bredding and Genetics Science for Life Laboratory, Department of Medical Biochemistry and Microbiology Bioinformatics Infrastructure for Life Sciences (BILS) University of Gothenburg (GU) Department of Ecology and Genetics Uppsala (EBC) Department of Veterinary Integrative Biosciences College of Veterinary Medicine and Biomedical Sciences Knut and Alice Wallenberg foundation; National Basic Research Program of China (973 Program) 2013CB835204 Shenzhen municipal government of China (DRC-SZ) 843 Key Laboratory of Genomics; Chinese Ministry of Agriculture; Platform of Whole Genome-Based Molecular Breeding; ShenZhen Engineering Laboratory for Genomics-Assisted Animal Breeding; Swedish Research Council 1989-2546, 1992-2685, 2013-5418, 2001-6005, 80576801, 70374401 Uppsala University and Hospital; Science for Life Laboratory |
format |
Article in Journal/Newspaper |
author |
Lamichhaney, Sangeet Fan, Guangyi Widemo, Fredrik Gunnarsson, Ulrika Thalmann, Doreen Schwochow Hoeppner, Marc P. Kerje, Susanne Gustafson, Ulla Shi, Chengcheng Zhang, He Chen, Wenbin Liang, Xinming Huang, Leihuan Wang, Jiahao Liang, Enjing Wu, Qiong Lee, Simon Ming-Yuen Xu, Xun Höglund, Jacob Liu, Xin Andersson, Leif |
author_facet |
Lamichhaney, Sangeet Fan, Guangyi Widemo, Fredrik Gunnarsson, Ulrika Thalmann, Doreen Schwochow Hoeppner, Marc P. Kerje, Susanne Gustafson, Ulla Shi, Chengcheng Zhang, He Chen, Wenbin Liang, Xinming Huang, Leihuan Wang, Jiahao Liang, Enjing Wu, Qiong Lee, Simon Ming-Yuen Xu, Xun Höglund, Jacob Liu, Xin Andersson, Leif |
author_sort |
Lamichhaney, Sangeet |
title |
Structural genomic changes underlie alternative reproductive strategies in the ruff ( Philomachus pugnax ) |
title_short |
Structural genomic changes underlie alternative reproductive strategies in the ruff ( Philomachus pugnax ) |
title_full |
Structural genomic changes underlie alternative reproductive strategies in the ruff ( Philomachus pugnax ) |
title_fullStr |
Structural genomic changes underlie alternative reproductive strategies in the ruff ( Philomachus pugnax ) |
title_full_unstemmed |
Structural genomic changes underlie alternative reproductive strategies in the ruff ( Philomachus pugnax ) |
title_sort |
structural genomic changes underlie alternative reproductive strategies in the ruff ( philomachus pugnax ) |
publisher |
HAL CCSD |
publishDate |
2016 |
url |
https://hal.inrae.fr/hal-02641550 https://doi.org/10.1038/ng.3430 |
genre |
Philomachus pugnax Ruff |
genre_facet |
Philomachus pugnax Ruff |
op_source |
ISSN: 1061-4036 EISSN: 1546-1718 Nature Genetics https://hal.inrae.fr/hal-02641550 Nature Genetics, Nature Publishing Group, 2016, 48 (1), pp.84-88. ⟨10.1038/ng.3430⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1038/ng.3430 info:eu-repo/semantics/altIdentifier/pmid/26569123 hal-02641550 https://hal.inrae.fr/hal-02641550 doi:10.1038/ng.3430 PRODINRA: 349710 WOS: 000367255300018 PUBMED: 26569123 |
op_doi |
https://doi.org/10.1038/ng.3430 |
container_title |
Nature Genetics |
container_volume |
48 |
container_issue |
1 |
container_start_page |
84 |
op_container_end_page |
88 |
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1766167370865311744 |