Genomics detects population structure within and between ocean basins in a circumpolar seabird: The white‐chinned petrel
International audience The Southern Ocean represents a continuous stretch of circumpolar marine habitat,but the potential physical and ecological drivers of evolutionary genetic differentiationacross this vast ecosystem remain unclear. We tested for genetic structure acrossthe full circumpolar range...
Published in: | Molecular Ecology |
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Online Access: | https://hal.archives-ouvertes.fr/hal-02364909 https://doi.org/10.1111/mec.15248 |
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ftccsdartic:oai:HAL:hal-02364909v1 2023-05-15T18:25:04+02:00 Genomics detects population structure within and between ocean basins in a circumpolar seabird: The white‐chinned petrel Rexer‐Huber, Kalinka Veale, Andrew Catry, Paulo Cherel, Yves Dutoit, Ludovic Foster, Yasmin McEwan, John Parker, Graham Phillips, Richard, Ryan, Peter, Stanworth, Andrew Stijn, Tracey Thompson, David Waters, Jonathan Robertson, Bruce Department of Zoology University of Otago Dunedin, Nouvelle-Zélande Parker Conservation New Zealand MARE – Marine and Environmental Sciences Centre Portugal Instituto Universitário Portugal Centre d'Études Biologiques de Chizé - UMR 7372 (CEBC) Université de La Rochelle (ULR)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) AgResearch New Zealand Invermay Agricultural Centre New Zealand British Antarctic Survey (BAS) Natural Environment Research Council (NERC) FitzPatrick Institute of African Ornithology University of Cape Town-DST-NRF Centre of Excellence Falklands Conservation National Institute of Water and Atmospheric Research Wellington (NIWA) 2019-08-11 https://hal.archives-ouvertes.fr/hal-02364909 https://doi.org/10.1111/mec.15248 en eng HAL CCSD Wiley info:eu-repo/semantics/altIdentifier/doi/10.1111/mec.15248 hal-02364909 https://hal.archives-ouvertes.fr/hal-02364909 doi:10.1111/mec.15248 ISSN: 0962-1083 EISSN: 1365-294X Molecular Ecology https://hal.archives-ouvertes.fr/hal-02364909 Molecular Ecology, Wiley, 2019, 28 (20), pp.4552-4572. ⟨10.1111/mec.15248⟩ Southern Ocean seabird population genomics genetic structure circumpolar GBS [SDE]Environmental Sciences info:eu-repo/semantics/article Journal articles 2019 ftccsdartic https://doi.org/10.1111/mec.15248 2021-11-07T01:32:22Z International audience The Southern Ocean represents a continuous stretch of circumpolar marine habitat,but the potential physical and ecological drivers of evolutionary genetic differentiationacross this vast ecosystem remain unclear. We tested for genetic structure acrossthe full circumpolar range of the white‐chinned petrel (Procellaria aequinoctialis) tounravel the potential drivers of population differentiation and test alternative populationdifferentiation hypotheses. Following range‐wide comprehensive sampling,we applied genomic (genotyping‐by‐sequencing or GBS; 60,709 loci) and standardmitochondrial‐marker approaches (cytochrome b and first domain of control region)to quantify genetic diversity within and among island populations, test for isolationby distance, and quantify the number of genetic clusters using neutral and outlier(non‐neutral) loci. Our results supported the multi‐region hypothesis, with a rangeof analyses showing clear three‐region genetic population structure, split by oceanbasin, within two evolutionary units. The most significant differentiation betweenthese regions confirmed previous work distinguishing New Zealand and nominatesubspecies. Although there was little evidence of structure within the island groupsof the Indian or Atlantic oceans, a small set of highly‐discriminatory outlier loci couldassign petrels to ocean basin and potentially to island group, though the latter needs further verification. Genomic data hold the key to revealing substantial regional geneticstructure within wide‐ranging circumpolar species previously assumed to bepanmictic. Article in Journal/Newspaper Southern Ocean Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Indian New Zealand Southern Ocean Molecular Ecology 28 20 4552 4572 |
institution |
Open Polar |
collection |
Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) |
op_collection_id |
ftccsdartic |
language |
English |
topic |
Southern Ocean seabird population genomics genetic structure circumpolar GBS [SDE]Environmental Sciences |
spellingShingle |
Southern Ocean seabird population genomics genetic structure circumpolar GBS [SDE]Environmental Sciences Rexer‐Huber, Kalinka Veale, Andrew Catry, Paulo Cherel, Yves Dutoit, Ludovic Foster, Yasmin McEwan, John Parker, Graham Phillips, Richard, Ryan, Peter, Stanworth, Andrew Stijn, Tracey Thompson, David Waters, Jonathan Robertson, Bruce Genomics detects population structure within and between ocean basins in a circumpolar seabird: The white‐chinned petrel |
topic_facet |
Southern Ocean seabird population genomics genetic structure circumpolar GBS [SDE]Environmental Sciences |
description |
International audience The Southern Ocean represents a continuous stretch of circumpolar marine habitat,but the potential physical and ecological drivers of evolutionary genetic differentiationacross this vast ecosystem remain unclear. We tested for genetic structure acrossthe full circumpolar range of the white‐chinned petrel (Procellaria aequinoctialis) tounravel the potential drivers of population differentiation and test alternative populationdifferentiation hypotheses. Following range‐wide comprehensive sampling,we applied genomic (genotyping‐by‐sequencing or GBS; 60,709 loci) and standardmitochondrial‐marker approaches (cytochrome b and first domain of control region)to quantify genetic diversity within and among island populations, test for isolationby distance, and quantify the number of genetic clusters using neutral and outlier(non‐neutral) loci. Our results supported the multi‐region hypothesis, with a rangeof analyses showing clear three‐region genetic population structure, split by oceanbasin, within two evolutionary units. The most significant differentiation betweenthese regions confirmed previous work distinguishing New Zealand and nominatesubspecies. Although there was little evidence of structure within the island groupsof the Indian or Atlantic oceans, a small set of highly‐discriminatory outlier loci couldassign petrels to ocean basin and potentially to island group, though the latter needs further verification. Genomic data hold the key to revealing substantial regional geneticstructure within wide‐ranging circumpolar species previously assumed to bepanmictic. |
author2 |
Department of Zoology University of Otago Dunedin, Nouvelle-Zélande Parker Conservation New Zealand MARE – Marine and Environmental Sciences Centre Portugal Instituto Universitário Portugal Centre d'Études Biologiques de Chizé - UMR 7372 (CEBC) Université de La Rochelle (ULR)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) AgResearch New Zealand Invermay Agricultural Centre New Zealand British Antarctic Survey (BAS) Natural Environment Research Council (NERC) FitzPatrick Institute of African Ornithology University of Cape Town-DST-NRF Centre of Excellence Falklands Conservation National Institute of Water and Atmospheric Research Wellington (NIWA) |
format |
Article in Journal/Newspaper |
author |
Rexer‐Huber, Kalinka Veale, Andrew Catry, Paulo Cherel, Yves Dutoit, Ludovic Foster, Yasmin McEwan, John Parker, Graham Phillips, Richard, Ryan, Peter, Stanworth, Andrew Stijn, Tracey Thompson, David Waters, Jonathan Robertson, Bruce |
author_facet |
Rexer‐Huber, Kalinka Veale, Andrew Catry, Paulo Cherel, Yves Dutoit, Ludovic Foster, Yasmin McEwan, John Parker, Graham Phillips, Richard, Ryan, Peter, Stanworth, Andrew Stijn, Tracey Thompson, David Waters, Jonathan Robertson, Bruce |
author_sort |
Rexer‐Huber, Kalinka |
title |
Genomics detects population structure within and between ocean basins in a circumpolar seabird: The white‐chinned petrel |
title_short |
Genomics detects population structure within and between ocean basins in a circumpolar seabird: The white‐chinned petrel |
title_full |
Genomics detects population structure within and between ocean basins in a circumpolar seabird: The white‐chinned petrel |
title_fullStr |
Genomics detects population structure within and between ocean basins in a circumpolar seabird: The white‐chinned petrel |
title_full_unstemmed |
Genomics detects population structure within and between ocean basins in a circumpolar seabird: The white‐chinned petrel |
title_sort |
genomics detects population structure within and between ocean basins in a circumpolar seabird: the white‐chinned petrel |
publisher |
HAL CCSD |
publishDate |
2019 |
url |
https://hal.archives-ouvertes.fr/hal-02364909 https://doi.org/10.1111/mec.15248 |
geographic |
Indian New Zealand Southern Ocean |
geographic_facet |
Indian New Zealand Southern Ocean |
genre |
Southern Ocean |
genre_facet |
Southern Ocean |
op_source |
ISSN: 0962-1083 EISSN: 1365-294X Molecular Ecology https://hal.archives-ouvertes.fr/hal-02364909 Molecular Ecology, Wiley, 2019, 28 (20), pp.4552-4572. ⟨10.1111/mec.15248⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1111/mec.15248 hal-02364909 https://hal.archives-ouvertes.fr/hal-02364909 doi:10.1111/mec.15248 |
op_doi |
https://doi.org/10.1111/mec.15248 |
container_title |
Molecular Ecology |
container_volume |
28 |
container_issue |
20 |
container_start_page |
4552 |
op_container_end_page |
4572 |
_version_ |
1766206244040736768 |