Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species
Data deposition: All genome sequencing data have been deposited at the European Nucleotide Archive under the accessions GCA_900239455, GCA_900239305, GCA_900239485, GCA_900239185, GCA_900239505, GCA_900239345, and GCA_900239495. International audience The genus Tenacibaculum encompasses several spec...
Published in: | Genome Biology and Evolution |
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2018
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Online Access: | https://hal.sorbonne-universite.fr/hal-01744087 https://hal.sorbonne-universite.fr/hal-01744087/document https://hal.sorbonne-universite.fr/hal-01744087/file/evy020.pdf https://doi.org/10.1093/gbe/evy020 |
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ftccsdartic:oai:HAL:hal-01744087v1 2023-05-15T15:32:18+02:00 Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species Bridel, Sébastien Olsen, Anne-Berit Nilsen, Hanne Bernardet, Jean-François Achaz, Guillaume Avendaño-Herrera, Ruben Duchaud, Eric Unité de recherche Virologie et Immunologie Moléculaires (VIM (UR 0892)) Institut National de la Recherche Agronomique (INRA) FINALAB Université de Versailles Saint-Quentin-en-Yvelines (UVSQ) Norwegian Veterinary Institute Oslo Institut de Systématique, Evolution, Biodiversité (ISYEB ) Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE) Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS) Universidad Andrés Bello - UNAB (CHILE) Universidad de Concepción Chile EU EMIDA ERA-NET project "Control Flavobacteriaceae Infections in European Fish farms" Agence Nationale pour la Recherche ANR-14-CE19-0020 National Infrastructure "France Genomique" funded as part of the Investissement d'avenir program managed by Agence Nationale pour la Recherche ANR-10-INBS-09 Comision Nacional de Investigacion Cientifica y Tecnologica (CONICYT, Chile) FONDECYT 1150695, CONICYT/FONDAP/15110027 2018-02 https://hal.sorbonne-universite.fr/hal-01744087 https://hal.sorbonne-universite.fr/hal-01744087/document https://hal.sorbonne-universite.fr/hal-01744087/file/evy020.pdf https://doi.org/10.1093/gbe/evy020 en eng HAL CCSD Society for Molecular Biology and Evolution info:eu-repo/semantics/altIdentifier/doi/10.1093/gbe/evy020 info:eu-repo/semantics/altIdentifier/pmid/29360975 hal-01744087 https://hal.sorbonne-universite.fr/hal-01744087 https://hal.sorbonne-universite.fr/hal-01744087/document https://hal.sorbonne-universite.fr/hal-01744087/file/evy020.pdf doi:10.1093/gbe/evy020 PRODINRA: 427852 WOS: 000426828300005 PUBMED: 29360975 http://creativecommons.org/licenses/by/ info:eu-repo/semantics/OpenAccess ISSN: 1759-6653 EISSN: 1759-6653 Genome Biology and Evolution https://hal.sorbonne-universite.fr/hal-01744087 Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2018, 10 (2), pp.452 - 457. ⟨10.1093/gbe/evy020⟩ https://academic.oup.com/gbe Tenacibaculum tenacibaculosis genomes fish pathogens virulence evolution [SDV]Life Sciences [q-bio] info:eu-repo/semantics/article Journal articles 2018 ftccsdartic https://doi.org/10.1093/gbe/evy020 2021-11-21T02:06:54Z Data deposition: All genome sequencing data have been deposited at the European Nucleotide Archive under the accessions GCA_900239455, GCA_900239305, GCA_900239485, GCA_900239185, GCA_900239505, GCA_900239345, and GCA_900239495. International audience The genus Tenacibaculum encompasses several species pathogenic for marine fish. Tenacibaculum dicentrarchi and " Tenacibaculum finnmarkense " (Quotation marks denote species that have not been validly named.) were retrieved from skin lesions of farmed fish such as European sea bass or Atlantic salmon. They cause a condition referred to as tenacibaculosis and severe outbreaks and important fish losses have been reported in Spanish, Norwegian, and Chilean marine farms. We report here the draft genomes of the T. dicentrarchi and " T. finnmarkense " type strains. These genomes were compared with draft genomes from field isolates retrieved from Chile and Norway and with previously published Tenacibaculum genomes. We used Average Nucleotide Identity and core genome-based phylogeny as a proxy index for species boundary delineation. This work highlights evolution of closely related fish-pathogenic species and suggests that homologous recombination likely contributes to genome evolution. Article in Journal/Newspaper Atlantic salmon Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Norway Genome Biology and Evolution 10 2 452 457 |
institution |
Open Polar |
collection |
Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) |
op_collection_id |
ftccsdartic |
language |
English |
topic |
Tenacibaculum tenacibaculosis genomes fish pathogens virulence evolution [SDV]Life Sciences [q-bio] |
spellingShingle |
Tenacibaculum tenacibaculosis genomes fish pathogens virulence evolution [SDV]Life Sciences [q-bio] Bridel, Sébastien Olsen, Anne-Berit Nilsen, Hanne Bernardet, Jean-François Achaz, Guillaume Avendaño-Herrera, Ruben Duchaud, Eric Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
topic_facet |
Tenacibaculum tenacibaculosis genomes fish pathogens virulence evolution [SDV]Life Sciences [q-bio] |
description |
Data deposition: All genome sequencing data have been deposited at the European Nucleotide Archive under the accessions GCA_900239455, GCA_900239305, GCA_900239485, GCA_900239185, GCA_900239505, GCA_900239345, and GCA_900239495. International audience The genus Tenacibaculum encompasses several species pathogenic for marine fish. Tenacibaculum dicentrarchi and " Tenacibaculum finnmarkense " (Quotation marks denote species that have not been validly named.) were retrieved from skin lesions of farmed fish such as European sea bass or Atlantic salmon. They cause a condition referred to as tenacibaculosis and severe outbreaks and important fish losses have been reported in Spanish, Norwegian, and Chilean marine farms. We report here the draft genomes of the T. dicentrarchi and " T. finnmarkense " type strains. These genomes were compared with draft genomes from field isolates retrieved from Chile and Norway and with previously published Tenacibaculum genomes. We used Average Nucleotide Identity and core genome-based phylogeny as a proxy index for species boundary delineation. This work highlights evolution of closely related fish-pathogenic species and suggests that homologous recombination likely contributes to genome evolution. |
author2 |
Unité de recherche Virologie et Immunologie Moléculaires (VIM (UR 0892)) Institut National de la Recherche Agronomique (INRA) FINALAB Université de Versailles Saint-Quentin-en-Yvelines (UVSQ) Norwegian Veterinary Institute Oslo Institut de Systématique, Evolution, Biodiversité (ISYEB ) Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE) Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS) Universidad Andrés Bello - UNAB (CHILE) Universidad de Concepción Chile EU EMIDA ERA-NET project "Control Flavobacteriaceae Infections in European Fish farms" Agence Nationale pour la Recherche ANR-14-CE19-0020 National Infrastructure "France Genomique" funded as part of the Investissement d'avenir program managed by Agence Nationale pour la Recherche ANR-10-INBS-09 Comision Nacional de Investigacion Cientifica y Tecnologica (CONICYT, Chile) FONDECYT 1150695, CONICYT/FONDAP/15110027 |
format |
Article in Journal/Newspaper |
author |
Bridel, Sébastien Olsen, Anne-Berit Nilsen, Hanne Bernardet, Jean-François Achaz, Guillaume Avendaño-Herrera, Ruben Duchaud, Eric |
author_facet |
Bridel, Sébastien Olsen, Anne-Berit Nilsen, Hanne Bernardet, Jean-François Achaz, Guillaume Avendaño-Herrera, Ruben Duchaud, Eric |
author_sort |
Bridel, Sébastien |
title |
Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
title_short |
Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
title_full |
Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
title_fullStr |
Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
title_full_unstemmed |
Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
title_sort |
comparative genomics of tenacibaculum dicentrarchi and “tenacibaculum finnmarkense” highlights intricate evolution of fish-pathogenic species |
publisher |
HAL CCSD |
publishDate |
2018 |
url |
https://hal.sorbonne-universite.fr/hal-01744087 https://hal.sorbonne-universite.fr/hal-01744087/document https://hal.sorbonne-universite.fr/hal-01744087/file/evy020.pdf https://doi.org/10.1093/gbe/evy020 |
geographic |
Norway |
geographic_facet |
Norway |
genre |
Atlantic salmon |
genre_facet |
Atlantic salmon |
op_source |
ISSN: 1759-6653 EISSN: 1759-6653 Genome Biology and Evolution https://hal.sorbonne-universite.fr/hal-01744087 Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2018, 10 (2), pp.452 - 457. ⟨10.1093/gbe/evy020⟩ https://academic.oup.com/gbe |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1093/gbe/evy020 info:eu-repo/semantics/altIdentifier/pmid/29360975 hal-01744087 https://hal.sorbonne-universite.fr/hal-01744087 https://hal.sorbonne-universite.fr/hal-01744087/document https://hal.sorbonne-universite.fr/hal-01744087/file/evy020.pdf doi:10.1093/gbe/evy020 PRODINRA: 427852 WOS: 000426828300005 PUBMED: 29360975 |
op_rights |
http://creativecommons.org/licenses/by/ info:eu-repo/semantics/OpenAccess |
op_doi |
https://doi.org/10.1093/gbe/evy020 |
container_title |
Genome Biology and Evolution |
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10 |
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2 |
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452 |
op_container_end_page |
457 |
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1766362817176272896 |