A species-specific microsatellite marker to discriminate European Atlantic salmon, brown trout, and their hybrids

• Published in: Conservation Genetics Resources
• Main Authors: Perrier, Charles, Grandjean, Frederic, Le Gentil, Jérôme, Cherbonnel, Corinne, Evanno, Guillaume
• Other Authors: Écologie et santé des écosystèmes (ESE), Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), UMR 6556 Laboratoire Ecologie, Evolution, Symbiose, Centre National de la Recherche Scientifique (CNRS), GENINDEXE - Laboratoire d'Analyses Génétiques, INRA, Region Basse-Normandie to C. P
• Format: Article in Journal/Newspaper
• Language: English
• Published: HAL CCSD 2011
• Subjects: atlantic; salmon; hybridization; microsatellite marker; sea trout; salmo salar; saumon de l'atlantique; salmo trutta; truite commune; europe; amérique du nord; [SDV.BA]Life Sciences [q-bio]/Animal biology; [SDE.BE]Environmental Sciences/Biodiversity and Ecology; Atlantic salmon; Salmo salar
• Online Access: https://hal.archives-ouvertes.fr/hal-01453825; https://doi.org/10.1007/s12686-010-9307-1

Atlantic salmon and brown trout frequently co-occur in the same habitats and juveniles of both species are difficult to discriminate. Hybridization between the two taxa has also been widely documented especially in endangered populations hence the need for species-specific molecular markers. Here we show that the microsatellite marker SsAD486 has two species-specific alleles allowing the identification of Atlantic salmon, brown trout, and their hybrids throughout the European range of these species. Since this marker is polymorphic in Atlantic salmon populations from Western Atlantic, it could also help discriminating between North American and European salmon.