Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments
International audience Yakutia, Sakha Republic, in the Siberian Far East, represents one of the coldest places on Earth, with winter record temperatures dropping below −70 °C. Nevertheless, Yakutian horses survive all year round in the open air due to striking phenotypic adaptations, including compa...
Published in: | Proceedings of the National Academy of Sciences |
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Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Other Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
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HAL CCSD
2015
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Subjects: | |
Online Access: | https://hal.archives-ouvertes.fr/hal-01256914 https://hal.archives-ouvertes.fr/hal-01256914/document https://hal.archives-ouvertes.fr/hal-01256914/file/2015-Librado-PNAS_tracking%20origins%20of%20Yakutian%20horses.pdf https://doi.org/10.1073/pnas.1513696112 |
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Open Polar |
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Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) |
op_collection_id |
ftccsdartic |
language |
English |
topic |
ancient genomics adaptation population discontinuity regulatory changes horse [SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropology |
spellingShingle |
ancient genomics adaptation population discontinuity regulatory changes horse [SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropology Librado, Pablo Der Sarkissian, Clio Ermini, Luca Schubert, Mikkel Jónsson, Hákon Albrechtsen, Anders Fumagalli, Matteo Yang, Melinda, Gamba, Cristina Seguin-Orlando, Andaine Mortensen, Cecilie, Petersen, Bent Hoover, Cindi, Lorente-Galdos, Belen Nedoluzhko, Artem Boulygina, Eugenia Tsygankova, Svetlana Neuditschko, Markus Jagannathan, Vidhya Thèves, Catherine Alfarhan, Ahmed, Alquraishin, Saleh, Al-Rasheidn, Khaled, Sicheritz-Ponten, Thomas Popov, Ruslan Grigoriev, Semyon Alekseev, Anatoly N Rubin, Edward, Mccue, Molly Rieder, Stefan Leeb, Tosso Tikhonov, Alexei Crubézy, Eric Slatkin, Montgomery Marques-Bonet, Tomas Nielsen, Rasmus Willerslev, Eske Kantanen, Juha Prokhortchouk, Egor Orlando, Ludovic Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments |
topic_facet |
ancient genomics adaptation population discontinuity regulatory changes horse [SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropology |
description |
International audience Yakutia, Sakha Republic, in the Siberian Far East, represents one of the coldest places on Earth, with winter record temperatures dropping below −70 °C. Nevertheless, Yakutian horses survive all year round in the open air due to striking phenotypic adaptations, including compact body conformations, extremely hairy winter coats, and acute seasonal differences in metabolic activities. The evolutionary origins of Yakutian horses and the genetic basis of their adaptations remain, however, contentious. Here, we present the complete genomes of nine present-day Yakutian horses and two ancient specimens dating from the early 19th century and ∼5,200 y ago. By comparing these genomes with the genomes of two Late Pleistocene, 27 domesticated, and three wild Przewalski's horses, we find that contemporary Yakutian horses do not descend from the native horses that populated the region until the mid-Holocene, but were most likely introduced following the migration of the Yakut people a few centuries ago. Thus, they represent one of the fastest cases of adaptation to the extreme temperatures of the Arctic. We find cis-regulatory mutations to have contributed more than nonsynonymous changes to their adaptation, likely due to the comparatively limited standing variation within gene bodies at the time the population was founded. Genes involved in hair development, body size, and metabolic and hormone signaling pathways represent an essential part of the Yakutian horse adaptive genetic toolkit. Finally, we find evidence for convergent evolution with native human populations and woolly mammoths, suggesting that only a few evolutionary strategies are compatible with survival in extremely cold environments. ancient genomics | adaptation | population discontinuity | regulatory changes | horse |
author2 |
Section for GeoGenetics Globe Institute Faculty of Health and Medical Sciences University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU)-Faculty of Health and Medical Sciences University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU) Bioinformatics Centre Department of Biology Copenhagen Faculty of Science Copenhagen University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU)-Faculty of Science Copenhagen Dept of Genetics, Evolution and Environment London (UCL-GEE) University College of London London (UCL) Department of Integrative Biology National High-Throughput DNA Sequencing Centre University of Copenhagen = Københavns Universitet (KU) Center for Biological Sequence Analysis, Department of Systems Biology Technical University of Denmark Lyngby (DTU) Department of Energy / Joint Genome Institute (DOE) Los Alamos National Laboratory (LANL) Universitat Pompeu Fabra Barcelona (UPF) Centro Nacional de Análisis Genómico National Research Centre Kurchatov Institute Agroscope, Swiss National Stud Farm Institute of Genetics University of Bern Anthropologie Moléculaire et Imagerie de Synthèse (AMIS) Université Toulouse III - Paul Sabatier (UT3) Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS) King Saud University Riyadh (KSU) Yakutian Research Institute of Agriculture North-Eastern Federal University College of Veterinary Medicine University of Minnesota Twin Cities (UMN) University of Minnesota System-University of Minnesota System Zoological Institute of Russian Academy of Sciences Russian Academy of Sciences Moscow (RAS) Center for Theoretical Evolutionary Genomics Berkeley (CTEG) Department of Integrative Biology Berkeley (IB) University of California Berkeley University of California-University of California-University of California Berkeley University of California-University of California Agrifood Research Finland Department of Biology, University of Eastern Finland University of Eastern Finland |
format |
Article in Journal/Newspaper |
author |
Librado, Pablo Der Sarkissian, Clio Ermini, Luca Schubert, Mikkel Jónsson, Hákon Albrechtsen, Anders Fumagalli, Matteo Yang, Melinda, Gamba, Cristina Seguin-Orlando, Andaine Mortensen, Cecilie, Petersen, Bent Hoover, Cindi, Lorente-Galdos, Belen Nedoluzhko, Artem Boulygina, Eugenia Tsygankova, Svetlana Neuditschko, Markus Jagannathan, Vidhya Thèves, Catherine Alfarhan, Ahmed, Alquraishin, Saleh, Al-Rasheidn, Khaled, Sicheritz-Ponten, Thomas Popov, Ruslan Grigoriev, Semyon Alekseev, Anatoly N Rubin, Edward, Mccue, Molly Rieder, Stefan Leeb, Tosso Tikhonov, Alexei Crubézy, Eric Slatkin, Montgomery Marques-Bonet, Tomas Nielsen, Rasmus Willerslev, Eske Kantanen, Juha Prokhortchouk, Egor Orlando, Ludovic |
author_facet |
Librado, Pablo Der Sarkissian, Clio Ermini, Luca Schubert, Mikkel Jónsson, Hákon Albrechtsen, Anders Fumagalli, Matteo Yang, Melinda, Gamba, Cristina Seguin-Orlando, Andaine Mortensen, Cecilie, Petersen, Bent Hoover, Cindi, Lorente-Galdos, Belen Nedoluzhko, Artem Boulygina, Eugenia Tsygankova, Svetlana Neuditschko, Markus Jagannathan, Vidhya Thèves, Catherine Alfarhan, Ahmed, Alquraishin, Saleh, Al-Rasheidn, Khaled, Sicheritz-Ponten, Thomas Popov, Ruslan Grigoriev, Semyon Alekseev, Anatoly N Rubin, Edward, Mccue, Molly Rieder, Stefan Leeb, Tosso Tikhonov, Alexei Crubézy, Eric Slatkin, Montgomery Marques-Bonet, Tomas Nielsen, Rasmus Willerslev, Eske Kantanen, Juha Prokhortchouk, Egor Orlando, Ludovic |
author_sort |
Librado, Pablo |
title |
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments |
title_short |
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments |
title_full |
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments |
title_fullStr |
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments |
title_full_unstemmed |
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments |
title_sort |
tracking the origins of yakutian horses and the genetic basis for their fast adaptation to subarctic environments |
publisher |
HAL CCSD |
publishDate |
2015 |
url |
https://hal.archives-ouvertes.fr/hal-01256914 https://hal.archives-ouvertes.fr/hal-01256914/document https://hal.archives-ouvertes.fr/hal-01256914/file/2015-Librado-PNAS_tracking%20origins%20of%20Yakutian%20horses.pdf https://doi.org/10.1073/pnas.1513696112 |
geographic |
Arctic Sakha |
geographic_facet |
Arctic Sakha |
genre |
Arctic Sakha Republic Subarctic Yakutia |
genre_facet |
Arctic Sakha Republic Subarctic Yakutia |
op_source |
ISSN: 0027-8424 EISSN: 1091-6490 Proceedings of the National Academy of Sciences of the United States of America https://hal.archives-ouvertes.fr/hal-01256914 Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2015, ⟨10.1073/pnas.1513696112⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1073/pnas.1513696112 hal-01256914 https://hal.archives-ouvertes.fr/hal-01256914 https://hal.archives-ouvertes.fr/hal-01256914/document https://hal.archives-ouvertes.fr/hal-01256914/file/2015-Librado-PNAS_tracking%20origins%20of%20Yakutian%20horses.pdf doi:10.1073/pnas.1513696112 |
op_rights |
info:eu-repo/semantics/OpenAccess |
op_doi |
https://doi.org/10.1073/pnas.1513696112 |
container_title |
Proceedings of the National Academy of Sciences |
container_volume |
112 |
container_issue |
50 |
container_start_page |
E6889 |
op_container_end_page |
E6897 |
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1766342937780682752 |
spelling |
ftccsdartic:oai:HAL:hal-01256914v1 2023-05-15T15:12:13+02:00 Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments Librado, Pablo Der Sarkissian, Clio Ermini, Luca Schubert, Mikkel Jónsson, Hákon Albrechtsen, Anders Fumagalli, Matteo Yang, Melinda, Gamba, Cristina Seguin-Orlando, Andaine Mortensen, Cecilie, Petersen, Bent Hoover, Cindi, Lorente-Galdos, Belen Nedoluzhko, Artem Boulygina, Eugenia Tsygankova, Svetlana Neuditschko, Markus Jagannathan, Vidhya Thèves, Catherine Alfarhan, Ahmed, Alquraishin, Saleh, Al-Rasheidn, Khaled, Sicheritz-Ponten, Thomas Popov, Ruslan Grigoriev, Semyon Alekseev, Anatoly N Rubin, Edward, Mccue, Molly Rieder, Stefan Leeb, Tosso Tikhonov, Alexei Crubézy, Eric Slatkin, Montgomery Marques-Bonet, Tomas Nielsen, Rasmus Willerslev, Eske Kantanen, Juha Prokhortchouk, Egor Orlando, Ludovic Section for GeoGenetics Globe Institute Faculty of Health and Medical Sciences University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU)-Faculty of Health and Medical Sciences University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU) Bioinformatics Centre Department of Biology Copenhagen Faculty of Science Copenhagen University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU)-Faculty of Science Copenhagen Dept of Genetics, Evolution and Environment London (UCL-GEE) University College of London London (UCL) Department of Integrative Biology National High-Throughput DNA Sequencing Centre University of Copenhagen = Københavns Universitet (KU) Center for Biological Sequence Analysis, Department of Systems Biology Technical University of Denmark Lyngby (DTU) Department of Energy / Joint Genome Institute (DOE) Los Alamos National Laboratory (LANL) Universitat Pompeu Fabra Barcelona (UPF) Centro Nacional de Análisis Genómico National Research Centre Kurchatov Institute Agroscope, Swiss National Stud Farm Institute of Genetics University of Bern Anthropologie Moléculaire et Imagerie de Synthèse (AMIS) Université Toulouse III - Paul Sabatier (UT3) Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS) King Saud University Riyadh (KSU) Yakutian Research Institute of Agriculture North-Eastern Federal University College of Veterinary Medicine University of Minnesota Twin Cities (UMN) University of Minnesota System-University of Minnesota System Zoological Institute of Russian Academy of Sciences Russian Academy of Sciences Moscow (RAS) Center for Theoretical Evolutionary Genomics Berkeley (CTEG) Department of Integrative Biology Berkeley (IB) University of California Berkeley University of California-University of California-University of California Berkeley University of California-University of California Agrifood Research Finland Department of Biology, University of Eastern Finland University of Eastern Finland 2015-10-27 https://hal.archives-ouvertes.fr/hal-01256914 https://hal.archives-ouvertes.fr/hal-01256914/document https://hal.archives-ouvertes.fr/hal-01256914/file/2015-Librado-PNAS_tracking%20origins%20of%20Yakutian%20horses.pdf https://doi.org/10.1073/pnas.1513696112 en eng HAL CCSD National Academy of Sciences info:eu-repo/semantics/altIdentifier/doi/10.1073/pnas.1513696112 hal-01256914 https://hal.archives-ouvertes.fr/hal-01256914 https://hal.archives-ouvertes.fr/hal-01256914/document https://hal.archives-ouvertes.fr/hal-01256914/file/2015-Librado-PNAS_tracking%20origins%20of%20Yakutian%20horses.pdf doi:10.1073/pnas.1513696112 info:eu-repo/semantics/OpenAccess ISSN: 0027-8424 EISSN: 1091-6490 Proceedings of the National Academy of Sciences of the United States of America https://hal.archives-ouvertes.fr/hal-01256914 Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2015, ⟨10.1073/pnas.1513696112⟩ ancient genomics adaptation population discontinuity regulatory changes horse [SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropology info:eu-repo/semantics/article Journal articles 2015 ftccsdartic https://doi.org/10.1073/pnas.1513696112 2021-12-12T04:41:18Z International audience Yakutia, Sakha Republic, in the Siberian Far East, represents one of the coldest places on Earth, with winter record temperatures dropping below −70 °C. Nevertheless, Yakutian horses survive all year round in the open air due to striking phenotypic adaptations, including compact body conformations, extremely hairy winter coats, and acute seasonal differences in metabolic activities. The evolutionary origins of Yakutian horses and the genetic basis of their adaptations remain, however, contentious. Here, we present the complete genomes of nine present-day Yakutian horses and two ancient specimens dating from the early 19th century and ∼5,200 y ago. By comparing these genomes with the genomes of two Late Pleistocene, 27 domesticated, and three wild Przewalski's horses, we find that contemporary Yakutian horses do not descend from the native horses that populated the region until the mid-Holocene, but were most likely introduced following the migration of the Yakut people a few centuries ago. Thus, they represent one of the fastest cases of adaptation to the extreme temperatures of the Arctic. We find cis-regulatory mutations to have contributed more than nonsynonymous changes to their adaptation, likely due to the comparatively limited standing variation within gene bodies at the time the population was founded. Genes involved in hair development, body size, and metabolic and hormone signaling pathways represent an essential part of the Yakutian horse adaptive genetic toolkit. Finally, we find evidence for convergent evolution with native human populations and woolly mammoths, suggesting that only a few evolutionary strategies are compatible with survival in extremely cold environments. ancient genomics | adaptation | population discontinuity | regulatory changes | horse Article in Journal/Newspaper Arctic Sakha Republic Subarctic Yakutia Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Arctic Sakha Proceedings of the National Academy of Sciences 112 50 E6889 E6897 |