Next-generation transcriptome characterization in three Nacella species (Patellogastropoda: Nacellidae) from South America and Antarctica
International audience The southern tip of South America and Antarctica are particularly interesting due to many genera and also species currently sharing between both areas. The genus Nacella (Patellogastropoda: Nacellidae) is distributed in different regions of South America and Antarctica living...
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Online Access: | https://hal.science/hal-01250909 https://doi.org/10.1016/j.margen.2014.06.004 |
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ftccsdartic:oai:HAL:hal-01250909v1 2024-02-27T08:35:17+00:00 Next-generation transcriptome characterization in three Nacella species (Patellogastropoda: Nacellidae) from South America and Antarctica Fuenzalida, Gonzalo Poulin, Elie Gonzalez-Wevar, Claudio Molina, Cristian Cardenas, Leyla Adaptation et Biologie des Invertébrés en Conditions Extrêmes (ABICE) Adaptation et diversité en milieu marin (AD2M) Station biologique de Roscoff Roscoff (SBR) Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff Roscoff (SBR) Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) Instituto de Ecología y Biodiversidad Instituto Antartico Chileno Inach T22-10 Millennium Nucleus Center for the Study of Multiple-drivers on Marine Socio-Ecological Systems (MUSELS) by MINECON NC120086 2014 https://hal.science/hal-01250909 https://doi.org/10.1016/j.margen.2014.06.004 en eng HAL CCSD Elsevier info:eu-repo/semantics/altIdentifier/doi/10.1016/j.margen.2014.06.004 hal-01250909 https://hal.science/hal-01250909 doi:10.1016/j.margen.2014.06.004 ISSN: 1874-7787 Marine Genomics https://hal.science/hal-01250909 Marine Genomics, 2014, 18 (B), pp.89-91. ⟨10.1016/j.margen.2014.06.004⟩ Pyrosequencing Comparative transcriptome Patellogastropods Antarctica South America [SDV]Life Sciences [q-bio] [SDE]Environmental Sciences info:eu-repo/semantics/article Journal articles 2014 ftccsdartic https://doi.org/10.1016/j.margen.2014.06.004 2024-01-28T03:54:41Z International audience The southern tip of South America and Antarctica are particularly interesting due to many genera and also species currently sharing between both areas. The genus Nacella (Patellogastropoda: Nacellidae) is distributed in different regions of South America and Antarctica living preferentially on rocks and boulders and grazing on algae, diatoms and bacterial films. We described the transcriptomes of three Nacella species, Nacella concinna (Strebel, 1908), inhabiting the Antarctic Peninsula; Nacella magallanica (Gmelin, 1791), from Patagonia and Nacella clypeater (Lesson, 1831), from central Chile. In total, we obtained over 20,000 contigs with an average length of 583 bp. Homologous protein coding genes (PCGs) for mitochondrial genome of the three species were characterized and a database of molecular markers was also generated. This study represents the first publicly available report on pyrosequencing data for patellogastropod species, and provides an important comparative resource for studies in ecophysiology and evolutionary adaptation in marine invertebrate species. (c) 2014 Elsevier B.V. All rights reserved. Article in Journal/Newspaper Antarc* Antarctic Antarctic Peninsula Antarctica Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Antarctic The Antarctic Antarctic Peninsula Patagonia Nacella ENVELOPE(-60.783,-60.783,-62.467,-62.467) Marine Genomics 18 89 91 |
institution |
Open Polar |
collection |
Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) |
op_collection_id |
ftccsdartic |
language |
English |
topic |
Pyrosequencing Comparative transcriptome Patellogastropods Antarctica South America [SDV]Life Sciences [q-bio] [SDE]Environmental Sciences |
spellingShingle |
Pyrosequencing Comparative transcriptome Patellogastropods Antarctica South America [SDV]Life Sciences [q-bio] [SDE]Environmental Sciences Fuenzalida, Gonzalo Poulin, Elie Gonzalez-Wevar, Claudio Molina, Cristian Cardenas, Leyla Next-generation transcriptome characterization in three Nacella species (Patellogastropoda: Nacellidae) from South America and Antarctica |
topic_facet |
Pyrosequencing Comparative transcriptome Patellogastropods Antarctica South America [SDV]Life Sciences [q-bio] [SDE]Environmental Sciences |
description |
International audience The southern tip of South America and Antarctica are particularly interesting due to many genera and also species currently sharing between both areas. The genus Nacella (Patellogastropoda: Nacellidae) is distributed in different regions of South America and Antarctica living preferentially on rocks and boulders and grazing on algae, diatoms and bacterial films. We described the transcriptomes of three Nacella species, Nacella concinna (Strebel, 1908), inhabiting the Antarctic Peninsula; Nacella magallanica (Gmelin, 1791), from Patagonia and Nacella clypeater (Lesson, 1831), from central Chile. In total, we obtained over 20,000 contigs with an average length of 583 bp. Homologous protein coding genes (PCGs) for mitochondrial genome of the three species were characterized and a database of molecular markers was also generated. This study represents the first publicly available report on pyrosequencing data for patellogastropod species, and provides an important comparative resource for studies in ecophysiology and evolutionary adaptation in marine invertebrate species. (c) 2014 Elsevier B.V. All rights reserved. |
author2 |
Adaptation et Biologie des Invertébrés en Conditions Extrêmes (ABICE) Adaptation et diversité en milieu marin (AD2M) Station biologique de Roscoff Roscoff (SBR) Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff Roscoff (SBR) Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) Instituto de Ecología y Biodiversidad Instituto Antartico Chileno Inach T22-10 Millennium Nucleus Center for the Study of Multiple-drivers on Marine Socio-Ecological Systems (MUSELS) by MINECON NC120086 |
format |
Article in Journal/Newspaper |
author |
Fuenzalida, Gonzalo Poulin, Elie Gonzalez-Wevar, Claudio Molina, Cristian Cardenas, Leyla |
author_facet |
Fuenzalida, Gonzalo Poulin, Elie Gonzalez-Wevar, Claudio Molina, Cristian Cardenas, Leyla |
author_sort |
Fuenzalida, Gonzalo |
title |
Next-generation transcriptome characterization in three Nacella species (Patellogastropoda: Nacellidae) from South America and Antarctica |
title_short |
Next-generation transcriptome characterization in three Nacella species (Patellogastropoda: Nacellidae) from South America and Antarctica |
title_full |
Next-generation transcriptome characterization in three Nacella species (Patellogastropoda: Nacellidae) from South America and Antarctica |
title_fullStr |
Next-generation transcriptome characterization in three Nacella species (Patellogastropoda: Nacellidae) from South America and Antarctica |
title_full_unstemmed |
Next-generation transcriptome characterization in three Nacella species (Patellogastropoda: Nacellidae) from South America and Antarctica |
title_sort |
next-generation transcriptome characterization in three nacella species (patellogastropoda: nacellidae) from south america and antarctica |
publisher |
HAL CCSD |
publishDate |
2014 |
url |
https://hal.science/hal-01250909 https://doi.org/10.1016/j.margen.2014.06.004 |
long_lat |
ENVELOPE(-60.783,-60.783,-62.467,-62.467) |
geographic |
Antarctic The Antarctic Antarctic Peninsula Patagonia Nacella |
geographic_facet |
Antarctic The Antarctic Antarctic Peninsula Patagonia Nacella |
genre |
Antarc* Antarctic Antarctic Peninsula Antarctica |
genre_facet |
Antarc* Antarctic Antarctic Peninsula Antarctica |
op_source |
ISSN: 1874-7787 Marine Genomics https://hal.science/hal-01250909 Marine Genomics, 2014, 18 (B), pp.89-91. ⟨10.1016/j.margen.2014.06.004⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1016/j.margen.2014.06.004 hal-01250909 https://hal.science/hal-01250909 doi:10.1016/j.margen.2014.06.004 |
op_doi |
https://doi.org/10.1016/j.margen.2014.06.004 |
container_title |
Marine Genomics |
container_volume |
18 |
container_start_page |
89 |
op_container_end_page |
91 |
_version_ |
1792041760675856384 |