Accuracy and cost of models predicting bird distribution in agricultural grasslands

Numerous agro-environmental indicators have been developed to assess the impact of farming systems on biodiversity. They can be combined into logistic models for predicting the presence of species of ecological interest. In general, several models are available for a given species and their practica...

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Published in:Agriculture, Ecosystems & Environment
Main Authors: Barbottin, Aude, Tichit, Muriel, Cadet, Claire, Makowski, David
Other Authors: Sciences pour l'Action et le Développement : Activités, Produits, Territoires (SADAPT), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Agronomie
Format: Article in Journal/Newspaper
Language:English
Published: HAL CCSD 2010
Subjects:
Online Access:https://hal.archives-ouvertes.fr/hal-01173187
https://doi.org/10.1016/j.agee.2009.10.009
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spelling ftccsdartic:oai:HAL:hal-01173187v1 2023-05-15T18:42:36+02:00 Accuracy and cost of models predicting bird distribution in agricultural grasslands Barbottin, Aude Tichit, Muriel Cadet, Claire Makowski, David Sciences pour l'Action et le Développement : Activités, Produits, Territoires (SADAPT) Institut National de la Recherche Agronomique (INRA)-AgroParisTech Agronomie 2010 https://hal.archives-ouvertes.fr/hal-01173187 https://doi.org/10.1016/j.agee.2009.10.009 en eng HAL CCSD Elsevier Masson info:eu-repo/semantics/altIdentifier/doi/10.1016/j.agee.2009.10.009 hal-01173187 https://hal.archives-ouvertes.fr/hal-01173187 doi:10.1016/j.agee.2009.10.009 PRODINRA: 38203 WOS: 000275135100003 ISSN: 0167-8809 Agriculture, Ecosystems and Environment https://hal.archives-ouvertes.fr/hal-01173187 Agriculture, Ecosystems and Environment, Elsevier Masson, 2010, 136 (1-2), pp.28-34. ⟨10.1016/j.agee.2009.10.009⟩ BAYESIAN MODEL AVERAGING BIRD LIVESTOCK FARMING SYSTEM LOGISTIC REGRESSION MODEL SELECTION SENSITIVITY SPECIFICITY COST [SDV]Life Sciences [q-bio] info:eu-repo/semantics/article Journal articles 2010 ftccsdartic https://doi.org/10.1016/j.agee.2009.10.009 2021-11-07T04:28:00Z Numerous agro-environmental indicators have been developed to assess the impact of farming systems on biodiversity. They can be combined into logistic models for predicting the presence of species of ecological interest. In general, several models are available for a given species and their practical value depends on their accuracy and the cost of measurement of their input variables. This paper aims to assess the accuracy and cost of implementation of a wide range of models predicting the presence of two grassland bird species, the lapwing Vanellus vanellus and the redshank Tringa totanus. Some of these models were developed using stepwise selection procedures and the others were developed by Bayesian Model Averaging. Sensitivity, specificity, and probability of correctly ranking fields (AUC) were estimated for each model from observational data. The cost of implementation of each model was computed as a function of the number and types of input variables. Results showed that the presence/absence of lapwings can be predicted more accurately than the presence/absence of redshanks, probably due to the stricter ecological requirements of lapwings. For both species, the highest AUC values were obtained with models combining habitat and management variables. The most costly models were not always the most accurate. Full models and models derived by Bayesian Model Averaging were most costly and less accurate than some of the models derived using selection procedures. When large sets of candidate variables were considered, the models selected using the BIC criterion were less costly and sometimes more accurate than the models selected using the AIC criterion. Article in Journal/Newspaper Vanellus vanellus Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Agriculture, Ecosystems & Environment 136 1-2 28 34
institution Open Polar
collection Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe)
op_collection_id ftccsdartic
language English
topic BAYESIAN MODEL AVERAGING
BIRD
LIVESTOCK FARMING SYSTEM
LOGISTIC REGRESSION
MODEL SELECTION
SENSITIVITY
SPECIFICITY
COST
[SDV]Life Sciences [q-bio]
spellingShingle BAYESIAN MODEL AVERAGING
BIRD
LIVESTOCK FARMING SYSTEM
LOGISTIC REGRESSION
MODEL SELECTION
SENSITIVITY
SPECIFICITY
COST
[SDV]Life Sciences [q-bio]
Barbottin, Aude
Tichit, Muriel
Cadet, Claire
Makowski, David
Accuracy and cost of models predicting bird distribution in agricultural grasslands
topic_facet BAYESIAN MODEL AVERAGING
BIRD
LIVESTOCK FARMING SYSTEM
LOGISTIC REGRESSION
MODEL SELECTION
SENSITIVITY
SPECIFICITY
COST
[SDV]Life Sciences [q-bio]
description Numerous agro-environmental indicators have been developed to assess the impact of farming systems on biodiversity. They can be combined into logistic models for predicting the presence of species of ecological interest. In general, several models are available for a given species and their practical value depends on their accuracy and the cost of measurement of their input variables. This paper aims to assess the accuracy and cost of implementation of a wide range of models predicting the presence of two grassland bird species, the lapwing Vanellus vanellus and the redshank Tringa totanus. Some of these models were developed using stepwise selection procedures and the others were developed by Bayesian Model Averaging. Sensitivity, specificity, and probability of correctly ranking fields (AUC) were estimated for each model from observational data. The cost of implementation of each model was computed as a function of the number and types of input variables. Results showed that the presence/absence of lapwings can be predicted more accurately than the presence/absence of redshanks, probably due to the stricter ecological requirements of lapwings. For both species, the highest AUC values were obtained with models combining habitat and management variables. The most costly models were not always the most accurate. Full models and models derived by Bayesian Model Averaging were most costly and less accurate than some of the models derived using selection procedures. When large sets of candidate variables were considered, the models selected using the BIC criterion were less costly and sometimes more accurate than the models selected using the AIC criterion.
author2 Sciences pour l'Action et le Développement : Activités, Produits, Territoires (SADAPT)
Institut National de la Recherche Agronomique (INRA)-AgroParisTech
Agronomie
format Article in Journal/Newspaper
author Barbottin, Aude
Tichit, Muriel
Cadet, Claire
Makowski, David
author_facet Barbottin, Aude
Tichit, Muriel
Cadet, Claire
Makowski, David
author_sort Barbottin, Aude
title Accuracy and cost of models predicting bird distribution in agricultural grasslands
title_short Accuracy and cost of models predicting bird distribution in agricultural grasslands
title_full Accuracy and cost of models predicting bird distribution in agricultural grasslands
title_fullStr Accuracy and cost of models predicting bird distribution in agricultural grasslands
title_full_unstemmed Accuracy and cost of models predicting bird distribution in agricultural grasslands
title_sort accuracy and cost of models predicting bird distribution in agricultural grasslands
publisher HAL CCSD
publishDate 2010
url https://hal.archives-ouvertes.fr/hal-01173187
https://doi.org/10.1016/j.agee.2009.10.009
genre Vanellus vanellus
genre_facet Vanellus vanellus
op_source ISSN: 0167-8809
Agriculture, Ecosystems and Environment
https://hal.archives-ouvertes.fr/hal-01173187
Agriculture, Ecosystems and Environment, Elsevier Masson, 2010, 136 (1-2), pp.28-34. ⟨10.1016/j.agee.2009.10.009⟩
op_relation info:eu-repo/semantics/altIdentifier/doi/10.1016/j.agee.2009.10.009
hal-01173187
https://hal.archives-ouvertes.fr/hal-01173187
doi:10.1016/j.agee.2009.10.009
PRODINRA: 38203
WOS: 000275135100003
op_doi https://doi.org/10.1016/j.agee.2009.10.009
container_title Agriculture, Ecosystems & Environment
container_volume 136
container_issue 1-2
container_start_page 28
op_container_end_page 34
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