Novel and cross-species microsatellite markers for parentage analysis in Sanderling
International audience We isolated and tested six novel microsatellite loci in Sanderling () from Greenland for paternity analyses. In addition, we tested 11 already published microsatellite markers which were originally developed for the congeneric species, the Pectoral Sandpiper (). All loci were...
Published in: | Journal of Ornithology |
---|---|
Main Authors: | , , , , , , , |
Other Authors: | , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
HAL CCSD
2011
|
Subjects: | |
Online Access: | https://hal.archives-ouvertes.fr/hal-00683837 https://hal.archives-ouvertes.fr/hal-00683837/document https://hal.archives-ouvertes.fr/hal-00683837/file/PEER_stage2_10.1007%252Fs10336-011-0681-6.pdf https://doi.org/10.1007/s10336-011-0681-6 |
id |
ftccsdartic:oai:HAL:hal-00683837v1 |
---|---|
record_format |
openpolar |
spelling |
ftccsdartic:oai:HAL:hal-00683837v1 2023-05-15T16:29:01+02:00 Novel and cross-species microsatellite markers for parentage analysis in Sanderling Luttikhuizen, Pieternella C. Bol, Anneke Witte, Harry Bleijswijk, Judith Haddrath, Oliver Baker, Allan J. Piersma, Theunis Reneerkens, Jeroen Royal Netherlands Institute for Sea Research (NIOZ) Department of Natural History Royal Ontario Museum Animal Ecology Group University of Groningen Groningen 2011-03-30 https://hal.archives-ouvertes.fr/hal-00683837 https://hal.archives-ouvertes.fr/hal-00683837/document https://hal.archives-ouvertes.fr/hal-00683837/file/PEER_stage2_10.1007%252Fs10336-011-0681-6.pdf https://doi.org/10.1007/s10336-011-0681-6 en eng HAL CCSD Springer Verlag info:eu-repo/semantics/altIdentifier/doi/10.1007/s10336-011-0681-6 hal-00683837 https://hal.archives-ouvertes.fr/hal-00683837 https://hal.archives-ouvertes.fr/hal-00683837/document https://hal.archives-ouvertes.fr/hal-00683837/file/PEER_stage2_10.1007%252Fs10336-011-0681-6.pdf doi:10.1007/s10336-011-0681-6 info:eu-repo/semantics/OpenAccess ISSN: 0021-8375 EISSN: 1439-0361 Journal für Ornithologie = Journal of Ornithology https://hal.archives-ouvertes.fr/hal-00683837 Journal für Ornithologie = Journal of Ornithology, Springer Verlag, 2011, 152 (3), pp.807-810. ⟨10.1007/s10336-011-0681-6⟩ Microsatellite markers Parentage analysis Breeding system Population genetics [SDV.BA]Life Sciences [q-bio]/Animal biology info:eu-repo/semantics/article Journal articles 2011 ftccsdartic https://doi.org/10.1007/s10336-011-0681-6 2020-12-26T04:54:08Z International audience We isolated and tested six novel microsatellite loci in Sanderling () from Greenland for paternity analyses. In addition, we tested 11 already published microsatellite markers which were originally developed for the congeneric species, the Pectoral Sandpiper (). All loci were polymorphic, but five of the cross-species loci were not scorable due to suboptimal amplification patterns. The 12 successful loci were tested on 87 individuals, yielding an average of 9.0 (range 4-19) alleles per locus and mean expected heterozygosity of 0.70. Because this dataset contained families, tests for Hardy-Weinberg equilibrium, linkage disequilibrium and probability of identity were done on a subset of the data containing 25 adults caught in the same year. The overall probability of identity was 1.0 × 10. Only one locus displayed significant homozygote excess and all loci were unlinked. On the basis of female heterozygotes, all loci are assumed to be autosomal. Article in Journal/Newspaper Greenland Sanderling Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Greenland Journal of Ornithology 152 3 807 810 |
institution |
Open Polar |
collection |
Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) |
op_collection_id |
ftccsdartic |
language |
English |
topic |
Microsatellite markers Parentage analysis Breeding system Population genetics [SDV.BA]Life Sciences [q-bio]/Animal biology |
spellingShingle |
Microsatellite markers Parentage analysis Breeding system Population genetics [SDV.BA]Life Sciences [q-bio]/Animal biology Luttikhuizen, Pieternella C. Bol, Anneke Witte, Harry Bleijswijk, Judith Haddrath, Oliver Baker, Allan J. Piersma, Theunis Reneerkens, Jeroen Novel and cross-species microsatellite markers for parentage analysis in Sanderling |
topic_facet |
Microsatellite markers Parentage analysis Breeding system Population genetics [SDV.BA]Life Sciences [q-bio]/Animal biology |
description |
International audience We isolated and tested six novel microsatellite loci in Sanderling () from Greenland for paternity analyses. In addition, we tested 11 already published microsatellite markers which were originally developed for the congeneric species, the Pectoral Sandpiper (). All loci were polymorphic, but five of the cross-species loci were not scorable due to suboptimal amplification patterns. The 12 successful loci were tested on 87 individuals, yielding an average of 9.0 (range 4-19) alleles per locus and mean expected heterozygosity of 0.70. Because this dataset contained families, tests for Hardy-Weinberg equilibrium, linkage disequilibrium and probability of identity were done on a subset of the data containing 25 adults caught in the same year. The overall probability of identity was 1.0 × 10. Only one locus displayed significant homozygote excess and all loci were unlinked. On the basis of female heterozygotes, all loci are assumed to be autosomal. |
author2 |
Royal Netherlands Institute for Sea Research (NIOZ) Department of Natural History Royal Ontario Museum Animal Ecology Group University of Groningen Groningen |
format |
Article in Journal/Newspaper |
author |
Luttikhuizen, Pieternella C. Bol, Anneke Witte, Harry Bleijswijk, Judith Haddrath, Oliver Baker, Allan J. Piersma, Theunis Reneerkens, Jeroen |
author_facet |
Luttikhuizen, Pieternella C. Bol, Anneke Witte, Harry Bleijswijk, Judith Haddrath, Oliver Baker, Allan J. Piersma, Theunis Reneerkens, Jeroen |
author_sort |
Luttikhuizen, Pieternella C. |
title |
Novel and cross-species microsatellite markers for parentage analysis in Sanderling |
title_short |
Novel and cross-species microsatellite markers for parentage analysis in Sanderling |
title_full |
Novel and cross-species microsatellite markers for parentage analysis in Sanderling |
title_fullStr |
Novel and cross-species microsatellite markers for parentage analysis in Sanderling |
title_full_unstemmed |
Novel and cross-species microsatellite markers for parentage analysis in Sanderling |
title_sort |
novel and cross-species microsatellite markers for parentage analysis in sanderling |
publisher |
HAL CCSD |
publishDate |
2011 |
url |
https://hal.archives-ouvertes.fr/hal-00683837 https://hal.archives-ouvertes.fr/hal-00683837/document https://hal.archives-ouvertes.fr/hal-00683837/file/PEER_stage2_10.1007%252Fs10336-011-0681-6.pdf https://doi.org/10.1007/s10336-011-0681-6 |
geographic |
Greenland |
geographic_facet |
Greenland |
genre |
Greenland Sanderling |
genre_facet |
Greenland Sanderling |
op_source |
ISSN: 0021-8375 EISSN: 1439-0361 Journal für Ornithologie = Journal of Ornithology https://hal.archives-ouvertes.fr/hal-00683837 Journal für Ornithologie = Journal of Ornithology, Springer Verlag, 2011, 152 (3), pp.807-810. ⟨10.1007/s10336-011-0681-6⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1007/s10336-011-0681-6 hal-00683837 https://hal.archives-ouvertes.fr/hal-00683837 https://hal.archives-ouvertes.fr/hal-00683837/document https://hal.archives-ouvertes.fr/hal-00683837/file/PEER_stage2_10.1007%252Fs10336-011-0681-6.pdf doi:10.1007/s10336-011-0681-6 |
op_rights |
info:eu-repo/semantics/OpenAccess |
op_doi |
https://doi.org/10.1007/s10336-011-0681-6 |
container_title |
Journal of Ornithology |
container_volume |
152 |
container_issue |
3 |
container_start_page |
807 |
op_container_end_page |
810 |
_version_ |
1766018704358768640 |