Genome sequence of the arctic methanotroph Methylobacter tundripaludum SV96.
International audience Methylobacter tundripaludum SV96(T) (ATCC BAA-1195) is a psychrotolerant aerobic methane-oxidizing gammaproteobacterium (Methylococcales, Methylococcaceae) living in High Arctic wetland soil. The strain was isolated from soil harvested in July 1996 close to the settlement Ny-Å...
Published in: | Journal of Bacteriology |
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Format: | Article in Journal/Newspaper |
Language: | English |
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Online Access: | https://hal.archives-ouvertes.fr/hal-00644077 https://doi.org/10.1128/JB.05380-11 |
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ftccsdartic:oai:HAL:hal-00644077v1 2023-05-15T14:43:57+02:00 Genome sequence of the arctic methanotroph Methylobacter tundripaludum SV96. Svenning, Mette M Hestnes, Anne Grethe Wartiainen, Ingvild Stein, Lisa Y Klotz, Martin G Kalyuzhnaya, Marina G Spang, Anja Bringel, Françoise Vuilleumier, Stéphane Lajus, Aurélie Médigue, Claudine Bruce, David C Cheng, Jan-Fang Goodwin, Lynne Ivanova, Natalia Han, James Han, Cliff S Hauser, Loren Held, Brittany Land, Miriam L Lapidus, Alla Lucas, Susan Nolan, Matt Pitluck, Sam Woyke, Tanja University of Alberta Génétique moléculaire, génomique, microbiologie (GMGM) Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS) Génomique métabolique (UMR 8030) Genoscope - Centre national de séquençage Evry (GENOSCOPE) Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE) Department of Energy / Joint Genome Institute (DOE) Los Alamos National Laboratory (LANL) 2011-11 https://hal.archives-ouvertes.fr/hal-00644077 https://doi.org/10.1128/JB.05380-11 en eng HAL CCSD American Society for Microbiology info:eu-repo/semantics/altIdentifier/doi/10.1128/JB.05380-11 info:eu-repo/semantics/altIdentifier/pmid/21725021 hal-00644077 https://hal.archives-ouvertes.fr/hal-00644077 doi:10.1128/JB.05380-11 PUBMED: 21725021 ISSN: 0021-9193 EISSN: 1098-5530 Journal of Bacteriology https://hal.archives-ouvertes.fr/hal-00644077 Journal of Bacteriology, American Society for Microbiology, 2011, 193 (22), pp.6418-9. ⟨10.1128/JB.05380-11⟩ [SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis info:eu-repo/semantics/article Journal articles 2011 ftccsdartic https://doi.org/10.1128/JB.05380-11 2021-12-19T03:32:37Z International audience Methylobacter tundripaludum SV96(T) (ATCC BAA-1195) is a psychrotolerant aerobic methane-oxidizing gammaproteobacterium (Methylococcales, Methylococcaceae) living in High Arctic wetland soil. The strain was isolated from soil harvested in July 1996 close to the settlement Ny-Ålesund, Svalbard, Norway (78°56'N, 11°53'E), and described as a novel species in 2006. The genome includes pmo and pxm operons encoding copper membrane monooxygenases (Cu-MMOs), genes required for nitrogen fixation, and the nirS gene implicated in dissimilatory nitrite reduction to NO but no identifiable inventory for further processing of nitrogen oxides. These genome data provide the basis to investigate M. tundripaludum SV96, identified as a major player in the biogeochemistry of Arctic environments. Article in Journal/Newspaper Arctic Ny Ålesund Ny-Ålesund Svalbard Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) Arctic Norway Ny-Ålesund Svalbard Journal of Bacteriology 193 22 6418 6419 |
institution |
Open Polar |
collection |
Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe) |
op_collection_id |
ftccsdartic |
language |
English |
topic |
[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis |
spellingShingle |
[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis Svenning, Mette M Hestnes, Anne Grethe Wartiainen, Ingvild Stein, Lisa Y Klotz, Martin G Kalyuzhnaya, Marina G Spang, Anja Bringel, Françoise Vuilleumier, Stéphane Lajus, Aurélie Médigue, Claudine Bruce, David C Cheng, Jan-Fang Goodwin, Lynne Ivanova, Natalia Han, James Han, Cliff S Hauser, Loren Held, Brittany Land, Miriam L Lapidus, Alla Lucas, Susan Nolan, Matt Pitluck, Sam Woyke, Tanja Genome sequence of the arctic methanotroph Methylobacter tundripaludum SV96. |
topic_facet |
[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis |
description |
International audience Methylobacter tundripaludum SV96(T) (ATCC BAA-1195) is a psychrotolerant aerobic methane-oxidizing gammaproteobacterium (Methylococcales, Methylococcaceae) living in High Arctic wetland soil. The strain was isolated from soil harvested in July 1996 close to the settlement Ny-Ålesund, Svalbard, Norway (78°56'N, 11°53'E), and described as a novel species in 2006. The genome includes pmo and pxm operons encoding copper membrane monooxygenases (Cu-MMOs), genes required for nitrogen fixation, and the nirS gene implicated in dissimilatory nitrite reduction to NO but no identifiable inventory for further processing of nitrogen oxides. These genome data provide the basis to investigate M. tundripaludum SV96, identified as a major player in the biogeochemistry of Arctic environments. |
author2 |
University of Alberta Génétique moléculaire, génomique, microbiologie (GMGM) Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS) Génomique métabolique (UMR 8030) Genoscope - Centre national de séquençage Evry (GENOSCOPE) Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE) Department of Energy / Joint Genome Institute (DOE) Los Alamos National Laboratory (LANL) |
format |
Article in Journal/Newspaper |
author |
Svenning, Mette M Hestnes, Anne Grethe Wartiainen, Ingvild Stein, Lisa Y Klotz, Martin G Kalyuzhnaya, Marina G Spang, Anja Bringel, Françoise Vuilleumier, Stéphane Lajus, Aurélie Médigue, Claudine Bruce, David C Cheng, Jan-Fang Goodwin, Lynne Ivanova, Natalia Han, James Han, Cliff S Hauser, Loren Held, Brittany Land, Miriam L Lapidus, Alla Lucas, Susan Nolan, Matt Pitluck, Sam Woyke, Tanja |
author_facet |
Svenning, Mette M Hestnes, Anne Grethe Wartiainen, Ingvild Stein, Lisa Y Klotz, Martin G Kalyuzhnaya, Marina G Spang, Anja Bringel, Françoise Vuilleumier, Stéphane Lajus, Aurélie Médigue, Claudine Bruce, David C Cheng, Jan-Fang Goodwin, Lynne Ivanova, Natalia Han, James Han, Cliff S Hauser, Loren Held, Brittany Land, Miriam L Lapidus, Alla Lucas, Susan Nolan, Matt Pitluck, Sam Woyke, Tanja |
author_sort |
Svenning, Mette M |
title |
Genome sequence of the arctic methanotroph Methylobacter tundripaludum SV96. |
title_short |
Genome sequence of the arctic methanotroph Methylobacter tundripaludum SV96. |
title_full |
Genome sequence of the arctic methanotroph Methylobacter tundripaludum SV96. |
title_fullStr |
Genome sequence of the arctic methanotroph Methylobacter tundripaludum SV96. |
title_full_unstemmed |
Genome sequence of the arctic methanotroph Methylobacter tundripaludum SV96. |
title_sort |
genome sequence of the arctic methanotroph methylobacter tundripaludum sv96. |
publisher |
HAL CCSD |
publishDate |
2011 |
url |
https://hal.archives-ouvertes.fr/hal-00644077 https://doi.org/10.1128/JB.05380-11 |
geographic |
Arctic Norway Ny-Ålesund Svalbard |
geographic_facet |
Arctic Norway Ny-Ålesund Svalbard |
genre |
Arctic Ny Ålesund Ny-Ålesund Svalbard |
genre_facet |
Arctic Ny Ålesund Ny-Ålesund Svalbard |
op_source |
ISSN: 0021-9193 EISSN: 1098-5530 Journal of Bacteriology https://hal.archives-ouvertes.fr/hal-00644077 Journal of Bacteriology, American Society for Microbiology, 2011, 193 (22), pp.6418-9. ⟨10.1128/JB.05380-11⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1128/JB.05380-11 info:eu-repo/semantics/altIdentifier/pmid/21725021 hal-00644077 https://hal.archives-ouvertes.fr/hal-00644077 doi:10.1128/JB.05380-11 PUBMED: 21725021 |
op_doi |
https://doi.org/10.1128/JB.05380-11 |
container_title |
Journal of Bacteriology |
container_volume |
193 |
container_issue |
22 |
container_start_page |
6418 |
op_container_end_page |
6419 |
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1766315540369899520 |